PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12994g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 332aa    MW: 37282.6 Da    PI: 7.421
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12994g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.9e-371232794133
                       TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 
                                kdrhski+T++g+R RR+Rls++ a++fF Lqd+LGfdk+skt+eWLl++++ +i el++                        
  Niben101Scf12994g02001.1 123 NKDRHSKISTARGLRVRRMRLSLDAARKFFSLQDMLGFDKASKTVEWLLNKSESEIEELAKGnkggeaipkqscsttngigaist 207
                               69***********************************************************99***9999888888888877764 PP

                       TCP  66 ssssa.sec...eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                 +s+ sec   +  ++sss   +++ + ak   k+k ++++ a++  l   e r++ar rarert+ k+++ 
  Niben101Scf12994g02001.1 208 A-ISSiSECeviSGTDESSSITDKKKLETAKGPSKKKGKTARRAAFDPLITrELRNQARIRARERTKIKKSLG 279
                               2.22246676664444444444333335566666666666666666777777**************9988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-40122276IPR005333Transcription factor, TCP
PROSITE profilePS5136932.475123181IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.73258275IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MYPPSNSCNY SPIFNILSPC MQYGDELFFQ YYHDDYLQEQ QVPLIEDQSL DILAESIETV  60
TNNKENVINS DHSVKVYNIE TVTNSQGWGG NEEERVEGGE NKRDDISGTI SIIHGRKNKK  120
CSNKDRHSKI STARGLRVRR MRLSLDAARK FFSLQDMLGF DKASKTVEWL LNKSESEIEE  180
LAKGNKGGEA IPKQSCSTTN GIGAISTAIS SISECEVISG TDESSSITDK KKLETAKGPS  240
KKKGKTARRA AFDPLITREL RNQARIRARE RTKIKKSLGK SEENSANDCN LVDNYGDWSL  300
FSIFNYQQNA VGISHDQITF SPKDDLNMQV RN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763147.10.0PREDICTED: transcription factor CYCLOIDEA-like isoform X1
RefseqXP_016504160.10.0PREDICTED: transcription factor CYCLOIDEA-like isoform X1
TrEMBLA0A1S4CSS50.0A0A1S4CSS5_TOBAC; transcription factor CYCLOIDEA-like isoform X1
TrEMBLA0A1U7V4M10.0A0A1U7V4M1_NICSY; transcription factor CYCLOIDEA-like isoform X1
STRINGXP_009763147.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-25TCP family protein