PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13036g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 491aa    MW: 55074.7 Da    PI: 4.5807
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13036g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.62.2e-29721932102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............ CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............ 74 
                               Fl+k++++++d++l+ +isw ++g+sfvv+d+ ef++ +Lpk Fkh+nf+SFvRQLn+Y  k    + +   +            
  Niben101Scf13036g00009.1  72 FLSKTFDLVDDSSLDFIISWGSKGESFVVWDPVEFSRMILPKNFKHNNFSSFVRQLNTYVDKAKMLRASLCINllnlggssnsag 156
                               9**********************************************************65444444433333899999999998 PP

                               .........XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  75 .........kekiweFkhksFkkgkkellekikrkks 102
                                        + + weF+++ F +gk++ll++i+r++s
  Niben101Scf13036g00009.1 157 risegfrkvDADRWEFANEGFLRGKRHLLKNIQRRRS 193
                               88877665449***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.63E-2968191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-4568191IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-3368191IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-127295IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2672191IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-12110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-12123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MNPFDKNPIS QPPASESDTL PPHSITMDPE FAVFSEPPTS PFINLESFPA GEEGLGVVQP  60
MECLHRTQIP PFLSKTFDLV DDSSLDFIIS WGSKGESFVV WDPVEFSRMI LPKNFKHNNF  120
SSFVRQLNTY VDKAKMLRAS LCINLLNLGG SSNSAGRISE GFRKVDADRW EFANEGFLRG  180
KRHLLKNIQR RRSPQSHQAG SSSAEAGKGT MDEIEKLRKE KSSMMQEVVE LLHQQHGMVQ  240
QMEAVNEKLQ AAELRQKQMV SFLAKVFQNP AFLARLRQMK EQEKITSPRT MRKFVKHQPH  300
DQDRPESSIE GQIVKYRPDF QDPVTSFENP DFNPVVDQQL PETGFGAEAM LFENQEQVIE  360
GASNFNPEDS YFEGKNVASP QLEVMPECFA SFPEELAKEK NILGFSSPGI GNIVKEEEVW  420
SMDFEASAGM SSTGTELWGS LSNYDVPDFG VSAGLPDVLW DTDPLQEAGS SGVDKWPNDE  480
SPFGQPKTDS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-176719615125Heat shock factor protein 1
5d5u_B1e-176719124129Heat shock factor protein 1
5d5v_B1e-176719124129Heat shock factor protein 1
5d5v_D1e-176719124129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250820.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A1S4CCN00.0A0A1S4CCN0_TOBAC; heat stress transcription factor A-3-like
TrEMBLA0A1U7VVI40.0A0A1U7VVI4_NICSY; heat stress transcription factor A-3
STRINGXP_009765951.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-97heat shock transcription factor A3