PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13047g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 494aa MW: 55140.9 Da PI: 6.8268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13047g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.2e-10	200	240	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAA++sR+RKka++++Le+ + ++Le+e Niben101Scf13047g00005.1 200 AKTVRRLAQNREAAKKSRLRKKAYVQQLETsriRLAQLEQE 240 6788************************9733355555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-5	197	264	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-8	199	245	No hit	No description
PROSITE profile	PS50217	9.036	199	243	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-7	200	240	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.44E-20	201	251	No hit	No description
SuperFamily	SSF57959	3.3E-6	201	243	No hit	No description
PROSITE pattern	PS00036	0	204	219	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-30	283	355	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MESQRIGESG SLSAESGPSH HHHNMSYALF RGLNPPNTSF MYHSTTNNQE PPVFGFGELE 60 EAIALQGVKM SNDEAAKAYF AFVILCSFIC NYEQTCCNSG DVPFLAYEIP SHPKSSALNT 120 YSSRGEPHLE PESPPISGKP SSDYQSLEQN QQQLQNQQQQ LQEMASDSPR IVVSHTEPAS 180 KPNHEKRKGV GSTSDRVVDA KTVRRLAQNR EAAKKSRLRK KAYVQQLETS RIRLAQLEQE 240 LQRARSQGLF MGGGAAAGAY ISSAGAAIFD MEYSRWLDDD QRHISELRTA LQAHLGDGDL 300 RIIVDGYIAH YDEIFQLKGV AAKSDVFHLI TGMWTTPAER CFLWMGGFRP SELIKQQVVG 360 IYSLQQSSQQ AEEALSQGLE QLQQSLIETV ATASLNDGMH HMAVALGKLA NLEGFLRQAD 420 NLRQQTLHQL HRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRETRMA DDNSCQTTTE 480 LQIIQASQHH FSNM

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MESQRIGESG SLSAESGPSH HHHNMSYALF RGLNPPNTSF MYHSTTNNQE PPVFGFGELE  60
EAIALQGVKM SNDEAAKAYF AFVILCSFIC NYEQTCCNSG DVPFLAYEIP SHPKSSALNT  120
YSSRGEPHLE PESPPISGKP SSDYQSLEQN QQQLQNQQQQ LQEMASDSPR IVVSHTEPAS  180
KPNHEKRKGV GSTSDRVVDA KTVRRLAQNR EAAKKSRLRK KAYVQQLETS RIRLAQLEQE  240
LQRARSQGLF MGGGAAAGAY ISSAGAAIFD MEYSRWLDDD QRHISELRTA LQAHLGDGDL  300
RIIVDGYIAH YDEIFQLKGV AAKSDVFHLI TGMWTTPAER CFLWMGGFRP SELIKQQVVG  360
IYSLQQSSQQ AEEALSQGLE QLQQSLIETV ATASLNDGMH HMAVALGKLA NLEGFLRQAD  420
NLRQQTLHQL HRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRETRMA DDNSCQTTTE  480
LQIIQASQHH FSNM

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485808.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_016485809.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_016485810.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S4BA79	0.0	A0A1S4BA79_TOBAC; transcription factor TGA2-like isoform X1
STRING	XP_009613713.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-155	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]