PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13242g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 242aa    MW: 27009.9 Da    PI: 6.5133
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13242g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.93.3e-5470165297
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               +eqdrflPianv+rimkkv+ +n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGf++yv+plk+y
  Niben101Scf13242g00001.1  70 KEQDRFLPIANVGRIMKKVITGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIGVLGFDEYVNPLKQY 154
                               89*********************************************************************************** PP

                     NF-YB  87 lkkyrelegek 97 
                               l+kyrelegek
  Niben101Scf13242g00001.1 155 LNKYRELEGEK 165
                               ********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.2E-5165179IPR009072Histone-fold
SuperFamilySSF471132.48E-3972180IPR009072Histone-fold
PfamPF008082.5E-2775139IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.8E-19103121No hitNo description
PROSITE patternPS006850106122IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.8E-19122140No hitNo description
PRINTSPR006159.8E-19141159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEDDKRGILP NVAIKRSPEN NSNITIQTTP ITTTTTTPAS TFTNNCTNIN TENNNNNNKC  60
SSSSNNNNSK EQDRFLPIAN VGRIMKKVIT GNGKISKDAK ETVQECVSEF ISFVTGEASD  120
KCQREKRKTI NGDDIIWAIG VLGFDEYVNP LKQYLNKYRE LEGEKLNVPN KQQQQQQQLH  180
DHAHSPSLPS YNSVYNSPSG LGLPQPPFVS TDQSFPLPLI SQNSIQSQLS QQEQQIDSVG  240
HW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-4270160797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798728.11e-114PREDICTED: nuclear transcription factor Y subunit B-7
SwissprotQ9SIT95e-61NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A1U7Y6H81e-113A0A1U7Y6H8_NICSY; nuclear transcription factor Y subunit B-7
STRINGXP_009798728.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-57nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]