PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13399g00011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 168aa    MW: 19507.2 Da    PI: 8.6599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13399g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-054670223
                              EET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                              kC+  dC  +Fs+k nL +H +  H
  Niben101Scf13399g00011.1 46 KCEfqDCQHTFSTKFNLIQHVKAvH 70
                              79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355271536IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-52667IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.57E-92683No hitNo description
SMARTSM003550.00244570IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.844575IPR007087Zinc finger, C2H2
PROSITE patternPS0002804770IPR007087Zinc finger, C2H2
SMARTSM003552076102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028078102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRNASRNTES CHQHIVCEIC RTKQLKKNIK RHLRTHEEES TSERIKCEFQ DCQHTFSTKF  60
NLIQHVKAVH LGDKPLSCGI AGCDMKFAFK HVRDRHEKSG CHVYTPGDFV EADEQFRSRP  120
RGGRKRKLPV FEAIMRKKIT PPCGTDPVFY QGSEYLSWLL SAESDEEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804391.11e-110PREDICTED: transcription factor IIIA-like isoform X1
RefseqXP_009804392.11e-110PREDICTED: Krueppel-related zinc finger protein 1-like isoform X2
RefseqXP_016477868.11e-110PREDICTED: transcription factor IIIA-like isoform X1
RefseqXP_016477869.11e-110PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ46e-52TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S4AMJ81e-108A0A1S4AMJ8_TOBAC; transcription factor IIIA-like isoform X2
TrEMBLA0A1S4AN431e-108A0A1S4AN43_TOBAC; transcription factor IIIA-like isoform X1
TrEMBLA0A1U7YJY41e-108A0A1U7YJY4_NICSY; Krueppel-related zinc finger protein 1-like isoform X2
TrEMBLA0A1U7YQZ71e-108A0A1U7YQZ7_NICSY; transcription factor IIIA-like isoform X1
STRINGXP_009804391.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.15e-55transcription factor IIIA