PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13505g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21310.1 Da    PI: 4.4049
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13505g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.5e-1410461450
                              HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               kR++ +lKK  ELS+LCd++++ ii+  +g++ +++
  Niben101Scf13505g02008.1 10 LKRKACVLKKTMELSILCDVKACAIIVDADGTVETWP 46
                              69**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003192.7E-91045IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-141075IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.8531149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEAADKRAML KRKACVLKKT MELSILCDVK ACAIIVDADG TVETWPENPA DLNPILDQYR  60
QYSLKKQKNV VVDVENRKGK EDVLLALDSK IEAVKRRIEF LNGKSIITAM NCDGNGEFAE  120
ILSDIIGGGS NSVNYGQEFE IQPCAYWDGE IGFSTANYVQ QLEQPCSNGN KNNPAYVDFE  180
FDFDFLLQHE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238550.11e-100PREDICTED: uncharacterized protein LOC109218635
TrEMBLA0A1J6K9J02e-98A0A1J6K9J0_NICAT; Uncharacterized protein
STRINGSolyc05g013370.1.13e-18(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.19e-11AGAMOUS-like 103