PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13540g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 616aa    MW: 68969.1 Da    PI: 6.8221
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13540g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.32.4e-33174295389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................sss 68 
                               g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a++ai+el ++                   +  
  Niben101Scf13540g00004.1 174 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQAAIDELEELppwkpttgpianstnfdqeK-- 256
                               89*************************************************************99888766553333222220.. PP

                       TCP  69 saseceaesssssasnsssg.........................k 89 
                                      ++++++ ++++++                          
  Niben101Scf13540g00004.1 257 -------NEQKENFDTQQNDvnvsiggssskramimlgnesearvL 295
                               .......222222222222234555554333444444433322220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-29174297IPR005333Transcription factor, TCP
PROSITE profilePS5136933.621175233IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
ATTTTTVSDF TTEEESEIVT QKSFQYQKLE HQKHNNKVLS LDPQRKNQYH HFHNQNVEEQ  60
EQGEEEEEKD QYQEQVFHAN HHLHNHFQQP HELFSQHHFL YQNLDNTQQQ PQQTQNTKQP  120
KKRSYVSSSS STQKKILEHA KPGEKMGTSS RFGLRNTGGE IVEVQGGHII RSIGRKDRHS  180
KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAQAAI DELEELPPWK  240
PTTGPIANST NFDQEKNEQK ENFDTQQNDV NVSIGGSSSK RAMIMLGNES EARVLHQTNS  300
GNSSGDNANA SFLPQSLDSD TIADTIKSFF PVGCSNESSS SSAMQFQNFQ EHNLLSRTGS  360
HSQDLRLSLH SFQDPILLQQ QAQHHNNPRN HTEEQSHFQA SNFFTGSTPL GFDASGWSLC  420
EHQQQPVEQR LTAATQLGFD ASGWSLSEHQ QQQPVELGRV QGLAAARAGG DSTGITLCGQ  480
AVAGTAGGYL FNSPPAPPLL QQLFGQNQFF SQRGPLQSSY SPAIRAWIDP PAIAIATADP  540
IHHHQAVLPM YSASISGIGF ASELGGFSGF RIPARIQGTI TILQMEMAKE RQWFIVEFDS  600
VAMHRGRRIL SKFQVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-20180233154Putative transcription factor PCF6
5zkt_B3e-20180233154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630327.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463776.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463777.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1S3ZHP10.0A0A1S3ZHP1_TOBAC; transcription factor TCP4-like
STRINGXP_009630327.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-74TCP family protein