PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13572g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26050.5 Da    PI: 9.1833
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13572g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss
  Niben101Scf13572g00012.1  9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSTRGKLYEFSS 59
                              68***********************************************96 PP
2K-box89.46.7e-30841759100
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                                 ++++e+ ++e+ kLk+++e+Lqr qRhllG++L++L++ eL++Le qL++slk+i+s++++l+l+q+++lq kek   e+nk 
  Niben101Scf13572g00012.1  84 GRDSNEEKFYREYLKLKAKYESLQRYQRHLLGDELGPLNIDELEHLELQLDTSLKHIKSTRTQLMLDQLSDLQTKEKLWIEANKG 168
                               5688999****************************************************************************** PP

                     K-box  94 Lrkklee 100
                               L++klee
  Niben101Scf13572g00012.1 169 LERKLEE 175
                               ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.898161IPR002100Transcription factor, MADS-box
CDDcd002651.42E-41278No hitNo description
SuperFamilySSF554553.01E-32285IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2486173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.76489179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFST RGKLYEFSST  60
SNTLKTLERY QKCSYGTLEV KQSGRDSNEE KFYREYLKLK AKYESLQRYQ RHLLGDELGP  120
LNIDELEHLE LQLDTSLKHI KSTRTQLMLD QLSDLQTKEK LWIEANKGLE RKLEEIYAEN  180
NLQQSWGGGE QSGAYSQQHP QTQASSSQIT GVTSGQNISG IVPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-269517523103Developmental protein SEPALLATA 3
4ox0_B7e-269517523103Developmental protein SEPALLATA 3
4ox0_C7e-269517523103Developmental protein SEPALLATA 3
4ox0_D7e-269517523103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757345.11e-160PREDICTED: developmental protein SEPALLATA 1-like isoform X1
RefseqXP_016509299.11e-160PREDICTED: developmental protein SEPALLATA 1-like
SwissprotQ8LLR21e-107MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S4D7L81e-158A0A1S4D7L8_TOBAC; developmental protein SEPALLATA 1-like
TrEMBLA0A1U7V6J01e-158A0A1U7V6J0_NICSY; developmental protein SEPALLATA 1-like isoform X1
STRINGXP_009757345.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.19e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]