PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13594g03006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 80aa MW: 9531.98 Da PI: 8.4715

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13594g03006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.2	3.4e-14	4	76	18	90
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + kkf+ + + + + +l+ sg++W+v+++ r ++ yv+ +GW+ Fvk++ L+e D +vFk++++s+f Niben101Scf13594g03006.1 4 IFKKFVLNLKDSYKLLGRKVLRGHSGNTWTVEVKRREDDDYYVFCNGWELFVKDHFLEEADLLVFKMKSSSSF 76 56666655533323333457899********87777777***********************8877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.774	1	80	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-11	2	76	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.9E-14	4	79	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.77E-14	5	78	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.49E-12	23	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MLFIFKKFVL NLKDSYKLLG RKVLRGHSGN TWTVEVKRRE DDDYYVFCNG WELFVKDHFL 60 EEADLLVFKM KSSSSFDVSN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631052.1	1e-38	PREDICTED: B3 domain-containing protein REM16-like
Refseq	XP_016514932.1	9e-39	PREDICTED: B3 domain-containing protein REM16-like
TrEMBL	A0A1S4DND1	2e-37	A0A1S4DND1_TOBAC; B3 domain-containing protein REM16-like
STRING	XP_009631052.1	4e-38	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13603	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-09	B3 family protein