PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13694g00021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 660aa MW: 74346.1 Da PI: 6.6272

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13694g00021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1e-14	57	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCk.aklkvkkekdgkwevtklele 84 +f+++YA++vGF++ + + ++ k +g i++ ++ Cs+e r+++ ++ C+ a+l++++++++ w+v+k++++ Niben101Scf13694g00021.1 57 NFFDAYARRVGFTIHVGQYNRAKPDGPIISWDYSCSREVVRRKNIES--------------CNaAMLRIERKNSESWVVAKFVED 127 69*************************************998877..............7625779************* PP FAR1 85 HnHela 90 HnH+++ Niben101Scf13694g00021.1 128 HNHSIV 133 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-11	57	133	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.399	341	377	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.5E-11	341	375	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.0E-8	352	379	IPR006564	Zinc finger, PMZ-type
PROSITE profile	PS50966	10.682	382	420	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-10	389	418	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-8	395	422	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
RAEEAKKTGE IAAELIHNSK QGLPENFTER DAIVEVDDGE EKPYVGMEFQ TEEAAKNFFD 60 AYARRVGFTI HVGQYNRAKP DGPIISWDYS CSREVVRRKN IESCNAAMLR IERKNSESWV 120 VAKFVEDHNH SIVNPSKVHY LQPRKHFSGA SKTVGVTPGA PTVIMVPVDG NHVSVSSNEG 180 FKDACPVESN LSWASILDRY DLRKNEWLQA VYNARNQWAP VYFRDTFFAA LPSNRSVTFF 240 FDGYVNQQTT LPMFFKQYER ALESSLEREI QSDFDTNCTT PMLKTPSPME QQASNLYTKK 300 VFAKFQEELV ETFAYTANKI DGDERLSKFR VAKYEQDDKA YSVMLNLEEM KASCSCHMFE 360 YSGILCRHIL TVFTVTNFRP IIYLXVMLNL GEMKASCSCH MFEYSGILCR HILTVFTVTN 420 VLTVPSHYIL RRWTKNAKVG QGSEEDIVKQ GINSLSSRFN HLCLEALRYA EEGAVSVETY 480 DAAISALREG LSKISIVAKN IVRPPSSQGS GSTQDESLKR TLATSDTAPF LWPWQDTVPH 540 QFNLNDVDLP AGDLNQPTMT PVAINRDGGL ADNVVVYSCF KSMTWVIENT TPASKVAVIN 600 LKLQDYGKSP AGETEVQFRV TKVTLEPMLK SMGYISQQLS LPANRVAVIN LKLQDTKSPS

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

RAEEAKKTGE IAAELIHNSK QGLPENFTER DAIVEVDDGE EKPYVGMEFQ TEEAAKNFFD  60
AYARRVGFTI HVGQYNRAKP DGPIISWDYS CSREVVRRKN IESCNAAMLR IERKNSESWV  120
VAKFVEDHNH SIVNPSKVHY LQPRKHFSGA SKTVGVTPGA PTVIMVPVDG NHVSVSSNEG  180
FKDACPVESN LSWASILDRY DLRKNEWLQA VYNARNQWAP VYFRDTFFAA LPSNRSVTFF  240
FDGYVNQQTT LPMFFKQYER ALESSLEREI QSDFDTNCTT PMLKTPSPME QQASNLYTKK  300
VFAKFQEELV ETFAYTANKI DGDERLSKFR VAKYEQDDKA YSVMLNLEEM KASCSCHMFE  360
YSGILCRHIL TVFTVTNFRP IIYLXVMLNL GEMKASCSCH MFEYSGILCR HILTVFTVTN  420
VLTVPSHYIL RRWTKNAKVG QGSEEDIVKQ GINSLSSRFN HLCLEALRYA EEGAVSVETY  480
DAAISALREG LSKISIVAKN IVRPPSSQGS GSTQDESLKR TLATSDTAPF LWPWQDTVPH  540
QFNLNDVDLP AGDLNQPTMT PVAINRDGGL ADNVVVYSCF KSMTWVIENT TPASKVAVIN  600
LKLQDYGKSP AGETEVQFRV TKVTLEPMLK SMGYISQQLS LPANRVAVIN LKLQDTKSPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	515	520	ESLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238552.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_019238553.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_019238554.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_019238555.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_019238556.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	1e-163	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S4BG32	0.0	A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
TrEMBL	A0A1S4C114	0.0	A0A1S4C114_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_009616992.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-162	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]