PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13748g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 483aa    MW: 52832.3 Da    PI: 8.7959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13748g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-115376427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                              + C++++rtG C yG++C+++H++
  Niben101Scf13748g00019.1 53 PDCSYYMRTGSCGYGANCRYNHPR 76
                              78********************96 PP
2zf-CCCH40.45e-1397121327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtGtCk+G++CkF+H++
  Niben101Scf13748g00019.1  97 EPMCQYYLRTGTCKFGASCKFHHPK 121
                               789********************96 PP
3zf-CCCH33.56.9e-11143167327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + +C+++++tG+Ck+G +Ck++H++
  Niben101Scf13748g00019.1 143 EIECSYYLKTGHCKFGITCKYHHPQ 167
                               568********************97 PP
4zf-CCCH37.34.6e-12297323127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+++++tG Ck+G++C+++H+p
  Niben101Scf13748g00019.1 297 PGQPTCQYYMKTGDCKFGSSCRYHHPP 323
                               57899********************97 PP
5zf-CCCH27.65e-09344369227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +  +C+f++  G+Ck+G  CkF H++
  Niben101Scf13748g00019.1 344 GVQPCSFYLLKGFCKFGRACKFDHPM 369
                               6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9674977IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-64976IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-95376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-65477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-694121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.73294122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-699120IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9100121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957140168IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5140167IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8143167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5144167IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.239296324IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6300324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4302322IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587342370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5344371IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4346367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MELYARSTGS NGSQSDHQSE WVSVEQETGL DGESMQRLGL WGREIYPERP VVPDCSYYMR  60
TGSCGYGANC RYNHPRDRAY GGKMQLERVE FPERLGEPMC QYYLRTGTCK FGASCKFHHP  120
KNLGGSLSSV PLNTHGYPLR PGEIECSYYL KTGHCKFGIT CKYHHPQTAG ISVPAPARPF  180
YPTVQSLPAP PEDYNSASTG LRVARPPLLP GSYVPSAYGP LLIHPGVVTI QNWSPYSGPV  240
SPALSPGAQP SAGVTSIYGI SQLASSTHAF AGTYSPLHSA AIPSSKTQKE KSFPERPGQP  300
TCQYYMKTGD CKFGSSCRYH HPPDWIASKT NCAISPLGLP LRPGVQPCSF YLLKGFCKFG  360
RACKFDHPMG TVQYSSSASS LPDLPIAPYM LRSSFAFAPT LLPELQAGFV SGSKVDVASL  420
SRPSSSLKVQ LGNKLCSSAN LQLVPGELRL FEAQMQYISE SCKLWSTEKT SFKLIPLIWL  480
KNM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226769.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-173C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314KQX50.0A0A314KQX5_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009776613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-175C3H family protein