PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13802g04006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 140aa MW: 16115.3 Da PI: 7.5133

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13802g04006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	37.7	4.9e-12	27	112	8	88
NF-YB 8 lPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 lP + v r++k l + ++ +s +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f +++epl++ l Niben101Scf13802g04006.1 27 LPKTIVRRLVKDKLSQlstDTDMSllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLRASL 111 666777777776654311133333226777778999999******************************************9988 PP NF-YB 88 k 88 + Niben101Scf13802g04006.1 112 E 112 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-27	19	128	IPR009072	Histone-fold
SuperFamily	SSF47113	2.29E-21	26	126	IPR009072	Histone-fold
Pfam	PF00808	1.7E-8	27	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MAEIEKQKDK EKEKLPAATV QIEQEGLPKT IVRRLVKDKL SQLSTDTDMS LLRDSLLAFS 60 ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PEFIEPLRAS LEERLKYSDK 120 GTRKGSQDHR SPQYLTKKQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251060.1	2e-63	DNA polymerase epsilon subunit 3
Refseq	XP_015057038.1	3e-63	DNA polymerase epsilon subunit 3
TrEMBL	A0A3Q7IZT6	6e-62	A0A3Q7IZT6_SOLLC; Uncharacterized protein
STRING	Solyc11g068480.1.1	1e-62	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-28	nuclear factor Y, subunit B11