PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13842g01008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 151aa MW: 17441.5 Da PI: 5.9923

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13842g01008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	24	64	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P K++ +++Le+A++Y+k L Niben101Scf13842g01008.1 24 ARERRHRISDRFKILQSLIPGG-----SKMDTVTMLEEATHYVKFL 64 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.773	15	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-13	20	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.23E-13	21	68	No hit	No description
SMART	SM00353	7.5E-12	21	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	21	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-7	24	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MNNKEKKKKG SVVKLSTDPQ SVAARERRHR ISDRFKILQS LIPGGSKMDT VTMLEEATHY 60 VKFLKTQIWL HQTMINIVDD YGNPNYHDQL LMAHDYNFAD YYPNDNNPTP VENAQINYNL 120 DQLQLPGYAF SDGNQFPGEE TNISGDAFMY Y

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016437360.1	2e-98	PREDICTED: transcription factor bHLH54-like
Swissprot	Q9M041	5e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A1S3XBQ2	5e-97	A0A1S3XBQ2_TOBAC; transcription factor bHLH54-like
STRING	XP_009609302.1	2e-94	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	4e-31	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]