PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13886g01021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 306aa MW: 34539.3 Da PI: 8.8906

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13886g01021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2.1e-05	170	209	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf13886g01021.1 170 RREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 209 ****************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.969	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0031	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00121	170	213	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-13	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-11	171	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MLGCEEISIL EKQRAIFERL YQCQQQLSSL PNQNLAQFNS LISEHIMDCS QVQNFPIKID 60 PQMDENSHSF NMFGREQKNR ADSGFTNNSL QLANQSLSTL SNSSITRTST KKRKSEFYEE 120 DDCKARKVEV QAGEVKSEIT VKSETGNSGN NSKENSKISE VKKPDYIHAR REKISKKMKC 180 LQDLVPGCNK VIGKAGMLDE IINYVQSLQK QVEFLSMKLA ASNLNTDNLF AKEFPSHMAN 240 FANPACLQNN LFQQQQQGSS VGVATMLPQL MQYSSYQILK LICNAFLVSA FSSKRRPNSL 300 FKVGFI

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087, ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253216.1	1e-170	PREDICTED: transcription factor BEE 2-like
Swissprot	Q93VJ4	1e-31	BEE2_ARATH; Transcription factor BEE 2
TrEMBL	A0A1J6IHP1	1e-169	A0A1J6IHP1_NICAT; Transcription factor bee 2
STRING	XP_009597248.1	1e-160	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4000	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.1	1e-30	BR enhanced expression 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]