PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14118g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 758aa    MW: 86709 Da    PI: 7.0652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14118g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.3e-05129178332
                               HHHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPk.as...................k 32 
                               +++n+ E+r+R ++ + f+  r+ lP+ ++                   +
  Niben101Scf14118g00010.1 129 KKANILEQRYRTNVGELFAHVRKKLPWaDPkvvkevidvelynllgertA 178
                               578************************55455555555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045583.3E-489158IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045575.8E-13161253IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
Gene3DG3DSA:3.40.50.6201.2E-28260329IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523744.15E-67260548No hitNo description
PfamPF007494.6E-65260423IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
PRINTSPR009877.4E-5264276IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780267278IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009877.4E-5293306IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.102.1E-35333416No hitNo description
Gene3DG3DSA:3.40.50.6201.2E-28417456IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PfamPF007491.2E-26424524IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:1.10.1160.102.7E-27457541IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507151.78E-57542752IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039502.4E-43542733IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.101.5E-30550660IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.102.9E-28661751IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MVKEEDSKTL ELFLKIGLDE KTAKNTLANN KVTTNLTAVI HEAAVTDGCD RTVATKFPAN  60
ALNHRPTLLQ YIVSTKIKTP AQLEAAFTFL AATASGDLNA QEFEDACGVG VEVSKDDIER  120
AVSEVFEEKK ANILEQRYRT NVGELFAHVR KKLPWADPKV VKEVIDVELY NLLGERTAAD  180
NEKPVKKKKE KPVKAEDKAK VDETPAPKPS EEEQNPYSIF PSPEENYKVH TEIYFSDRPV  240
LRACNSKELL EKHLKVTGRK VLTRFPPEPN GYLHIGHAKA MFVDFGLAKE RGGGCYLRFD  300
DTNPEAEKKE YIDHIKEIVR WMGWETYKIT HTSDYFQDLY ELAVELIKRG HAYVDHQTAE  360
EVKEYRERKM NSPWRDRPIE ESLRLFDEMK KGMIDEGKAT LRMKQDMQSD NFNMYDLIAY  420
RIKLCTLEFE TRRASYYWLL DALGLYQPFV WEYSRLNVSN TVMSKRKLNR LVTEKWVDGW  480
DDPRLMTLAG LRRRGVASTA INAFVRGIGI TRRLGTHLSS DCSMIHLSRL EYHIREELNK  540
TAPRTMVVLN PLKVVITNLE AGLVTDLDAK KWPEAPANDA SSFYKVPFSR VVYIERTDFR  600
LKDSKDYFGL APGKSVLLRY AYPIKCTDVI LADDKETVLE IRAEYDPSKT TKPKGVLHWV  660
AEPSPGVDPL KVEARLFDRL FLSENPAELE DWLGDLNPES KVVIQNAYAV PLVKTAALGD  720
RFQFERLGYF AVDQDSTSEK LVFNRTVTLR DSYAKGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ye8_A1e-16997557775Glutamine--tRNA ligase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256816.10.0PREDICTED: glutamine--tRNA ligase
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A1J6HTN30.0A0A1J6HTN3_NICAT; Glutamine--trna ligase, cytoplasmic
STRINGXP_009797950.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213