PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14118g00011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 180aa    MW: 21282.9 Da    PI: 4.8893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14118g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-182370148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT eEd ll++++   G g+W++ a++ g++Rt+k+c++rw++yl
  Niben101Scf14118g00011.1 23 RGPWTLEEDNLLIHYISNNGEGRWNALAKCAGLKRTGKSCRLRWLNYL 70
                              89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-221773IPR009057Homeodomain-like
PROSITE profilePS5129422.2921874IPR017930Myb domain
SMARTSM007177.9E-152272IPR001005SANT/Myb domain
PfamPF002499.1E-172370IPR001005SANT/Myb domain
SuperFamilySSF466891.55E-222498IPR009057Homeodomain-like
CDDcd001675.10E-112570No hitNo description
Gene3DG3DSA:1.10.10.607.3E-77497IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSKNIVIMSN NSSNEEDQFE LRRGPWTLEE DNLLIHYISN NGEGRWNALA KCAGLKRTGK  60
SCRLRWLNYL KPDIKRGNLT PQEQLLILEL HSKWGNRMYS TDSMNMLKLQ PHEMTQDFTI  120
YNNSVQNECY HVESLNQQPD FSSQEMSISE CDVAEFHWFS DEMAATSLWN MDEFWQFRML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-14209724100MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256818.12e-63PREDICTED: transcription factor MYB108-like
TrEMBLA0A1J6I9Z54e-62A0A1J6I9Z5_NICAT; Transcription factor myb108
STRINGXP_009797951.17e-63(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-48myb domain protein 62