PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf14206g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 190aa MW: 20838.9 Da PI: 5.2508

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf14206g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.5	3.9e-42	33	131	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++ e+er da++s+vyeA+ar+rdPvyG++g i +lq+ Niben101Scf14206g00005.1 33 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQEVGEDERADAVKSMVYEANARIRDPVYGCAGAICQLQK 117 7********************************************************************************** PP DUF260 86 qleqlkaelallke 99 q+++l+aela+++ Niben101Scf14206g00005.1 118 QISELQAELAKAQV 131 ********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.577	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-42	33	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MECSDKITAT SSSSSAGMMT PPLSPPSPVI LTPCAACKIL RRRCVDKCVL APYFPPTEPL 60 KFTIAHRVFG ASNIIKMLQE VGEDERADAV KSMVYEANAR IRDPVYGCAG AICQLQKQIS 120 ELQAELAKAQ VEMLNVQSQN ANLVSLICRE MSQNQENNGS VCPHQQTNYG NTNLFLDDNS 180 VYPALEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-41	24	135	2	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-41	24	135	2	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485630.1	1e-118	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-68	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4B9N0	1e-116	A0A1S4B9N0_TOBAC; LOB domain-containing protein 1-like
STRING	XP_009588230.1	1e-116	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	5e-70	LOB domain-containing protein 1