PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14310g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 375aa    MW: 41344.2 Da    PI: 4.8583
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14310g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.7e-16214250135
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Niben101Scf14310g00003.1 214 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 250
                               *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.0876111IPR010399Tify domain
SMARTSM009794.4E-976111IPR010399Tify domain
PfamPF062004.5E-1180109IPR010399Tify domain
PROSITE profilePS5101712.531145187IPR010402CCT domain
PfamPF062031.1E-14145186IPR010402CCT domain
SMARTSM004014.4E-12208261IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12212262No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15212254IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.71E-16213261No hitNo description
PfamPF003201.8E-13214249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEAPYSRVLG FEEEYMNVAI RVDEYGGGGF DADDISGGCE GSGTEELQQV CSSVPPLAAS  60
PVVDSDGRVL AAMPMPSRRP SELTISFEGQ VYVFPAVTPD KVQAVLLLLE GSDMASYVPS  120
SHSLALQTTK SVDNDVPTRP NISRRIASLI RFREKRKERC FEKTVRYTCR KEVAQRMHRK  180
NGQFASLKDG EKTYAGNIDS GDSIPHPEPT LRRCQHCGIS ESETPAMRRG PSGPRTLCNA  240
CGLMWANKGM LRDITKGGRG PPFDKSEPRT PDIKLSTVAP ENSYQKQYQE DMQEASENFV  300
DNSPVGIGSS SADIDEEFDV KRDKIYNRTF EKLHLPSFLV QQDNLDKLAN ASGTEFDIPA  360
SFDEQIGIDS HMGAD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231398.10.0PREDICTED: GATA transcription factor 19-like isoform X1
RefseqXP_019231399.10.0PREDICTED: GATA transcription factor 19-like isoform X1
RefseqXP_019231401.10.0PREDICTED: GATA transcription factor 19-like isoform X1
SwissprotQ5Z4U57e-55GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A314KHV40.0A0A314KHV4_NICAT; Gata transcription factor 28
STRINGXP_009776483.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-47ZIM-like 1