PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14523g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 315aa    MW: 35171 Da    PI: 8.8696
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14523g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly64.12.8e-2090146156
                    Whirly   1 svyktkaalkvkavrptfeald.sgnlklkraGglllelanataerkydWekkqsfa 56 
                               s+yk+kaal+v+++ p+f+ ld sg++kl+r+G++ll++a+a+++r+ydW++kq+ +
  Niben101Scf14523g00003.1  90 SIYKGKAALTVDPRPPEFSPLDqSGAFKLSREGFVLLQFAPAAGVRQYDWGRKQVVS 146
                               7******************98659******************************864 PP
2Whirly128.44e-4019027653139
                    Whirly  53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                               q+f+l +te+++l++l++k+sceffhdp ++ s+eGkvrk+lkvePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+
  Niben101Scf14523g00003.1 190 QVFSLCVTEMGSLISLGAKDSCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSA 274
                               89*********************************************************************************99 PP

                    Whirly 138 lv 139
                               ++
  Niben101Scf14523g00003.1 275 FN 276
                               86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.2E-2577146IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.59E-2083146IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.0E-1891146IPR013742Plant transcription factor
SuperFamilySSF544471.41E-50190315IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.5E-34190273IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.106.2E-45190298IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLNLSLSPAG ISVNFQNPTK TSSPYPCYQP LSFSSSFNTI LISPLNSNTK SSKAFPRNLS  60
LTCRHSEYFE PQQQQQQQGA STPKVYVGYS IYKGKAALTV DPRPPEFSPL DQSGAFKLSR  120
EGFVLLQFAP AAGVRQYDWG RKQVVSTLIP LFAPLQNSYF MHFSYPWIEA RLRFDKNQIV  180
EYVVVICGGQ VFSLCVTEMG SLISLGAKDS CEFFHDPNKG RSDEGKVRKV LKVEPLPDGS  240
GHFFNLSVQN KLINLDENIY IPVTKAEFAV LVSAFNFVVP YLLGWHTAVN SFKPEDATRS  300
NNANPRSGAD LEWSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1186431412219p24: plant transcriptional regulator PBF-2
1l3a_B1e-1186431412219p24: plant transcriptional regulator PBF-2
1l3a_C1e-1186431412219p24: plant transcriptional regulator PBF-2
1l3a_D1e-1186431412219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257017.11e-168PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-141WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A1J6IDX21e-167A0A1J6IDX2_NICAT; Single-stranded dna-binding protein why1, chloroplastic
STRINGXP_009599234.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-100ssDNA-binding transcriptional regulator