PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14606g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 297aa    MW: 32934.1 Da    PI: 7.2052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14606g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14152199355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L +A+e+Ik+L+
  Niben101Scf14606g00002.1 152 QDHVVAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGEAIEHIKQLE 199
                               56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.726149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-18153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-17154214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-14154203No hitNo description
SMARTSM003531.5E-15155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSRDDDAFIN HCEMMTQLDE LPFNKPFSSS FTSYDIQPCH AAVEILDVKP PLCGYATETH  60
KMTSFSPPPL NSFSVFSSCK FNSPSANTNH FENLNYSSVK TELPSGTTLN FSSSMGSDDF  120
GDSQNLIQAL GFGSADTTTQ KKSYNRTSFQ AQDHVVAERK RRERLTQRFI ALSTLIPNLK  180
KLDKATVLGE AIEHIKQLEE QVKTLEQKAK KLNSKEPVVA VKRPRLASSN HSSSSEDNDS  240
SVISTDPSQP DIKVRASHGN NILISISCKK QTGMIKEIFS QLEKLDLSII CSSVIPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-12153218874Transcription factor MYC2
5gnj_B3e-12153218874Transcription factor MYC2
5gnj_E3e-12153218874Transcription factor MYC2
5gnj_F3e-12153218874Transcription factor MYC2
5gnj_G3e-12153218874Transcription factor MYC2
5gnj_I3e-12153218874Transcription factor MYC2
5gnj_M3e-12153218874Transcription factor MYC2
5gnj_N3e-12153218874Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434460.11e-169PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S3X3A41e-167A0A1S3X3A4_TOBAC; transcription factor bHLH18-like
STRINGXP_009611349.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.13e-34bHLH family protein