PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14922g00027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 261aa    MW: 28452.9 Da    PI: 9.359
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14922g00027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-3979139262
                    zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                               k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s
  Niben101Scf14922g00027.1  79 KDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNNKRS 139
                               5799*****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2766131IPR003851Zinc finger, Dof-type
PfamPF027013.5E-3380137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.77983137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
METTQWTQDI GIGKSMAAEI AAPNVTVEKK LLFPPLDLFS FFGFMETTQW TQDIGIVKSM  60
AAEIAAPNVT VEKKVRPVKD QAINCPRCNS TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG  120
GTLRNVPVGG GSRKNNKRSS SSSSSTQKLP DLNPNSSSTP ISTLELLRSG IASRGYTSFI  180
SSPKPPDLNT LYTSGFPFQE LKPSAGSNDH AAVALSYSNG VQENGGARIM FPLGADHHHQ  240
SKGQENSAAG FWNGMLGGGS W
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230438.11e-133PREDICTED: dof zinc finger protein DOF2.5-like isoform X4
SwissprotQ433852e-47DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A1S3ZFW71e-130A0A1S3ZFW7_TOBAC; dof zinc finger protein DOF2.5-like isoform X3
TrEMBLA0A1U7UW711e-130A0A1U7UW71_NICSY; dof zinc finger protein DOF2.5 isoform X2
STRINGXP_009760286.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.39e-45Dof family protein