PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14929g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 286aa    MW: 31310.1 Da    PI: 9.6191
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14929g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK64.22.1e-202673350
                    RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                              k+is++++sk F+lp+ dAA +Lgvc++vLK+iC ++G+ RWP+Rk+ 
  Niben101Scf14929g00002.1 26 KSISFDQVSKLFNLPLSDAAESLGVCASVLKKICYENGMVRWPYRKVI 73
                              79********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.1071094IPR003035RWP-RK domain
PfamPF020422.5E-182872IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSNLQGSGPI SNPIQNPTPN PNTDPKSISF DQVSKLFNLP LSDAAESLGV CASVLKKICY  60
ENGMVRWPYR KVISGKSIED IKKEALREKQ ERSVGFPKTA GEKHDFLASS AVSSFPGSPL  120
KSISSTMEMP KAGAFSQQQG ARIAQSGGLP HFRISNLTRG TSVSYDEFKY GFPSDGLSTV  180
TCRWWGNKSP DNNDDIQQND GNAENSKEPA GNVAEKSEYK TSVDSKEASS LTDVRKRAVK  240
EGKEMLRLGV YRGHSANMLD STKQKILRQV FKSYFHVNGG MSNLES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246984.10.0PREDICTED: uncharacterized protein LOC109226619
TrEMBLA0A1J6IVJ70.0A0A1J6IVJ7_NICAT; Uncharacterized protein
STRINGXP_009600090.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107441921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.15e-10NIN like protein 7