PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15120g01016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 527aa    MW: 58954.4 Da    PI: 6.9268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15120g01016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.81.6e-1161545261374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalk 82 
                               lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++L  rla  +  +++  +++ + ++++   +++  al+
  Niben101Scf15120g01016.1 154 LVQLLITCAEAVACRDKSRASILLSELRASALVFGTSFQRVASCFVQGLTDRLALvQPLGTVGYVATPAMNKTDiaLEKKEEALR 238
                               689**************************************************9843334554555555554446688899999* PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetg 162
                               l+++++P ++f+h++aN+ Ilea+ege+ vH++D+++s    +G QW  L+q+La+Rp++pp +lRiT+vg+    + e+ + +g
  Niben101Scf15120g01016.1 239 LLYKICPHIQFGHFVANSSILEAFEGESFVHVVDLGMSvglpHGHQWRRLIQSLANRPGQPPrRLRITAVGQ----NIEKFQIIG 319
                               ***********************************9884444678*************877779********....99******* PP

                      GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                               + L+ +A++lg+++ef++ v+++le+l++++++v  gEal+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++
  Niben101Scf15120g01016.1 320 DELEAYARSLGINLEFSA-VESNLENLKPKDIKVYDGEALVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSS 400
                               ******************.79*******************************88877777...8********************* PP

                      GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                               hn++ Fl rf+eal+yysa+fdsl++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  
  Niben101Scf15120g01016.1 401 HNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK-- 483
                               *********************************************************************************96.. PP

                      GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++qak  l+kv+  +g+++ ee+g+lvlgWk++p+v++S+W+
  Niben101Scf15120g01016.1 484 MVSQAKQWLAKVNaYEGFTITEEKGCLVLGWKSKPIVAASCWK 526
                               79****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.295128507IPR005202Transcription factor GRAS
PfamPF035145.6E-114154526IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MTYDMVTSFL SLEPCNDDKI VYDSLENGLY LSRKELTYSL NPYTTVFKRN AASMFSNLSN  60
ESGDFKRLRR TPSLGESLGS NSISFYCDSS SSSSCSIPRN DSTNSVNSLQ LAPGLHFRDH  120
VWALNQRYLA AEAIEEAAAD IINQEEENGE GMKLVQLLIT CAEAVACRDK SRASILLSEL  180
RASALVFGTS FQRVASCFVQ GLTDRLALVQ PLGTVGYVAT PAMNKTDIAL EKKEEALRLL  240
YKICPHIQFG HFVANSSILE AFEGESFVHV VDLGMSVGLP HGHQWRRLIQ SLANRPGQPP  300
RRLRITAVGQ NIEKFQIIGD ELEAYARSLG INLEFSAVES NLENLKPKDI KVYDGEALVV  360
NSILQLHCVV KESRGALNSV LQVVHELSPK ILVLVEQDSS HNGPFFLGRF MEALHYYSAI  420
FDSLDVMLPK YDTRRAKIEQ FYFAEEIKNI VSCEGPARVE RHERVDQWRR RMSRAGFQAA  480
PIKMVSQAKQ WLAKVNAYEG FTITEEKGCL VLGWKSKPIV AASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-641425256377Protein SCARECROW
5b3h_D7e-641425256377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769411.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016495537.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S4C2Z80.0A0A1S4C2Z8_TOBAC; DELLA protein RGL1-like
TrEMBLA0A1U7VWS80.0A0A1U7VWS8_NICSY; DELLA protein RGL1-like
STRINGXP_009769411.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-79GRAS family protein