PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15515g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 454aa    MW: 50902.3 Da    PI: 6.6319
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15515g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001786103219
                               EETTTTEEESSHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                               +C++Cgk Fs++ ++  H
  Niben101Scf15515g01004.1  86 VCENCGKEFSSWKSFLEH 103
                               6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.00461739IPR007087Zinc finger, C2H2
PROSITE profilePS501578.61739IPR007087Zinc finger, C2H2
SMARTSM003556.11739IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.57E-51739No hitNo description
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576673.57E-580104No hitNo description
SMARTSM0035518085105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.7E-6228251No hitNo description
PfamPF139121.3E-9229253IPR007087Zinc finger, C2H2
SMARTSM003550.13229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-6291318No hitNo description
PfamPF139125.9E-13296319IPR007087Zinc finger, C2H2
SMARTSM003550.52296318IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328296318IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MACIDQEQQQ HQPLFKHYCR VCKKGFVCGR ALGGHMRAHG IGDEGANLDD DPASDWEDKF  60
GGSVRGGNKR MYQLRTNPNR QKSNRVCENC GKEFSSWKSF LEHGKCSSED AEESVVSSPC  120
SEGEEYITNG ERKGYGWSKR KRSLRTKVGT LSTSTYPSSE EDDLLLAKCL IDLANARVDT  180
SLPEPEESCA SASKEEERAR NPMTYLTPLV TTRVPLDNKA KGVSSKGLFE CKACKKVFNS  240
HQALGGHRAS HKKVKGCYAV KQDQLDDSLI DDQDMNITHD EFTLQASKSM RKSKIHECSI  300
CHRVFSTGQA LGGHKRCHWI TSNSPDSSKY NFHSHMEQIN LRSNLRKSGD ALDLNIPSHE  360
DMSRVRRDPM NPLSFDVSTE IHLHPWNTKD NSSDNYYLEE IKNNNNNNNN NNSLTPNVED  420
DEADMEKDMN TSSENPSHWL QVGIGSTTEV GADS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785654.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_016484023.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S4B5F20.0A0A1S4B5F2_TOBAC; zinc finger protein ZAT4-like
TrEMBLA0A1U7XFD10.0A0A1U7XFD1_NICSY; zinc finger protein ZAT4-like
STRINGXP_009785654.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-26C2H2-like zinc finger protein