PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf15543g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 235aa MW: 25755.4 Da PI: 6.0097

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf15543g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.4	5.5e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ + v+Gavg++ Niben101Scf15543g01002.1 2 SCNGCRVLRKGCSENCILRPCLqwietAESQGHATVFVAKFFGRAGLISFISAVPENQRPSLFRSLLYEAAGRTVNRVNGAVGLL 86 6*******************9999777889************************************************* PP DUF260 81 lklqqqleqlkaelall 97 ++++++++q+++e++l+ Niben101Scf15543g01002.1 87 WTGNWHVCQAAVETVLR 103 *********999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.136	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETAE SQGHATVFVA KFFGRAGLIS FISAVPENQR 60 PSLFRSLLYE AAGRTVNRVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PDFLGASLDI 120 DEASECADVF KVEHASQNNM QPMMQERCRF PEEASNVLQL ADLDLSLTPG FQSQKVFSHA 180 LPENRRPGTP SMNSEESGTT TCFESGTVIG NHQGNEPKLL SLFNLVAVVF FLIFC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801229.1	1e-155	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9FN11	6e-79	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1U7YPR8	1e-154	A0A1U7YPR8_NICSY; LOB domain-containing protein 37
STRING	XP_009801229.1	1e-155	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-81	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]