PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf15657g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 195aa MW: 22261.6 Da PI: 9.622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf15657g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.7	1.7e-27	82	170	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY++YAk+vGF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r+tr++tr gCka++ vk +k++kw+vt++++eH+ Niben101Scf15657g00001.1 82 FYDDYAKRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYMKMKNHYGPPRKTRTSTREGCKAMMLVKVNKSDKWVVTRFVKEHT 166 9*****************************************999********************************** PP FAR1 87 Hela 90 H+l Niben101Scf15657g00001.1 167 HPLI 170 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-25	82	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MFLTNNFTGA YTWAGELIND FKSVVGRITR SRYFFIGLVD LEAGATTIDC SAESQLVACE 60 DNVVREPFIG MEFESEDAAK GFYDDYAKRV GFIMRIDQCR RSEVDKRILS RRLSCNKQGY 120 YMKMKNHYGP PRKTRTSTRE GCKAMMLVKV NKSDKWVVTR FVKEHTHPLI ASGCSSRNAM 180 VRVTRFIINT LCGSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779434.1	1e-102	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_009779435.1	1e-102	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016470835.1	1e-101	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016470842.1	1e-101	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4A2C9	1e-100	A0A1S4A2C9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7WYX6	1e-100	A0A1U7WYX6_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009779434.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-46	FAR1 family protein