PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15843g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 201aa    MW: 23421.6 Da    PI: 9.3117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15843g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-082464341
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41
                               WT+eE +++  a + +  +   +W+ +a++++ g+++ ++ 
  Niben101Scf15843g00004.1 24 EWTKEENKKFESALAIYDEKtpnRWSMVAAMIP-GKSALDVM 64
                              7********************************.***98875 PP
2Myb_DNA-binding422.2e-13121165347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
  Niben101Scf15843g00004.1 121 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 165
                               8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-51469IPR009057Homeodomain-like
PROSITE profilePS500906.9691771IPR017877Myb-like domain
SuperFamilySSF466891.38E-111971IPR009057Homeodomain-like
SMARTSM007174.8E-102173IPR001005SANT/Myb domain
CDDcd001672.41E-72471No hitNo description
PfamPF002492.8E-62467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-12111171IPR009057Homeodomain-like
PROSITE profilePS5129419.357114170IPR017930Myb domain
SuperFamilySSF466891.05E-16115169IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-18117169IPR006447Myb domain, plants
SMARTSM007171.2E-11118168IPR001005SANT/Myb domain
PfamPF002491.4E-11121165IPR001005SANT/Myb domain
CDDcd001673.35E-9121165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
METLFPTTFM PNSNWMMQQS KSTEWTKEEN KKFESALAIY DEKTPNRWSM VAAMIPGKSA  60
LDVMMQYKEL VADVSDIEAG FVPTPRPFAS SFTLEFVDHR EIHAFRKRGK SCDQERKKGV  120
PWTEEEHRRF LMGLEKYGKG DWRNISRNFV ISKTPTQVAS HAQKYYLRQL SEGKDKKRPS  180
IHDITTVHLA DDELLNNNNN K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105117RKRGKSCDQERKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241357.11e-141PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ8S9H73e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1J6JSM61e-139A0A1J6JSM6_NICAT; Transcription factor myb1r1
STRINGXP_009776702.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-85MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]