PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15962g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 520aa    MW: 59027.1 Da    PI: 6.3122
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15962g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.31.5e-22220272154
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                               k r+ Wtp++H++F +a++qL G+e A+Pk+i+e+m+ +gLt+ehv+SHLQ  R
  Niben101Scf15962g00019.1 220 KRRVAWTPKMHQNFFQAIQQL-GHEMAVPKKIVEIMNEPGLTREHVASHLQATR 272
                               689******************.*****************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-525101No hitNo description
SuperFamilySSF521721.42E-528109IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.601.5E-21218274IPR009057Homeodomain-like
SuperFamilySSF466897.17E-14218273IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-21220272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDIQGITANS SLGESTPYTS DIGTKRSCIL LVLDDITCHN IVSHMLHNQT YQVLHVGKIM  60
DTLNAIWERK SILNLVLTNI HRLNTHGVDI LQIIKNKLNL PTICKYFKYM LSFSFSHQVL  120
LILPAVMSPD DTRYENQVQD CNEQALANGL EKEKGRKAVV NQEENDYDNV TRSPQNVTET  180
NTENTSSADS DVRAHDVKGK RKAYSDRSEE DGENRVIKKK RRVAWTPKMH QNFFQAIQQL  240
GHEMAVPKKI VEIMNEPGLT REHVASHLQA TRGYSRSTQQ PFHKHFQQGT GGINLRQPLM  300
VSHPNMVGFQ PQNSFLDFAN SRQAEYNSGL IEQQSIFLPR VAHNSNFRAY KVARQTSPQT  360
QILDWIVLDY THKQQSSLPF LETPNKNTLI QCSSAPPENF TIFNHPSNSN SEQQNLLLFD  420
NAANKITCQS REMHLHTQEQ LSASGDIEVY SAILFGDEAS VPPLEYSGNY DSGQQLYSVP  480
ELPQEFNSLG TEIDIKSLLE TTENISSRLF WEGDSENELH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199221KRKAYSDRSEEDGENRVIKKKRR
2217221KKKRR
3217222KKKRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480490.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1S4AV910.0A0A1S4AV91_TOBAC; two-component response regulator ARR12-like
STRINGXP_009598455.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-23response regulator 2