PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15972g02014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 607aa    MW: 68927.1 Da    PI: 5.2335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15972g02014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042578596220
                               EETTTTEEESSHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                               +C+ Cg+ F ++ +L++H+
  Niben101Scf15972g02014.1 578 SCETCGEEFDTRNQLHKHL 596
                               6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.57E-1862128IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.2E-1671128IPR001623DnaJ domain
SMARTSM002711.9E-1571134IPR001623DnaJ domain
CDDcd062571.61E-1472126IPR001623DnaJ domain
PROSITE profilePS5007613.61772147IPR001623DnaJ domain
PfamPF002262.5E-1473127IPR001623DnaJ domain
PRINTSPR006253.6E-97492IPR001623DnaJ domain
PRINTSPR006253.6E-992107IPR001623DnaJ domain
PRINTSPR006253.6E-9113133IPR001623DnaJ domain
SuperFamilySSF576672.83E-13274322No hitNo description
SMARTSM004519.9E-7278312IPR003604Zinc finger, U1-type
PfamPF121713.9E-10281306IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003551.7281305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283305IPR007087Zinc finger, C2H2
SMARTSM003555.4577601IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556577606IPR007087Zinc finger, C2H2
PROSITE patternPS000280579601IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
LCLDLIVVVR SKQGSFTVPN QTARKVCNLP SPIDKTLIKA PLGAQQTGRK KEKEKPVFLS  60
FSSIMASSEK RCLYEVLGVN RDCTPDEIRS AYRRLALQRH PDKLVKSGVP ESEATAAFQE  120
LVNAYECILV TPIQARDFTR SMVTAFYNYW LGFVTVMDFC WVDQYDVMAG PNRKSRRVME  180
EENKKLRKKA RREYNETVRG LAEFVKKRDK RVIDMQMKRN EEMERKRDKE RERKKELERE  240
KAEKAKKYVE PDWAKAEELD DEEIEEEWDE DGKKKADGNE LYCVVCSKKF KSEKQWKNHE  300
QSKKHKEKVA SLREAFDDED DEYEGLVEDG VSEEQKVADG DITADLSADD GVDELAEQFE  360
GSTRTQEDEC EDDEVQSSDE DETTSKGLDD RLNYRSGSDS KGVADEPGLD DDEASVLEAM  420
VSGRKSRKNA GPGGSRQASA KNVQGESSND EMDFMEYNNP RSIRRNRGGR RQRNRRPQEE  480
EDEEGGGGDV RSYATKVGID TELDSAYDES SAFQEPSSES PAETTNDHKG SDVSRNSDKV  540
PSQGMDKKTT AKKEKKTKSK DATKGRKHKG TSKFSSNSCE TCGEEFDTRN QLHKHLGATG  600
HAKLKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183191KKLRKKARR
2463476RRNRGGRRQRNRRP
3464475RNRGGRRQRNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243728.10.0PREDICTED: DNAJ protein JJJ1 homolog isoform X2
SwissprotQ9C9111e-92JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A1J6IWK00.0A0A1J6IWK0_NICAT; Dnaj protein jjj1-like protein
TrEMBLA0A1U7XB010.0A0A1U7XB01_NICSY; dnaJ homolog subfamily C member 21
STRINGXP_009788038.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.13e-61DNAJ heat shock N-terminal domain-containing protein