PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16127g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 490aa    MW: 51367.9 Da    PI: 7.892
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16127g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-124973327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG+C yG+rC+F+H+p
  Niben101Scf16127g00005.1 49 EADCIYYLRTGFCGYGSRCRFNHPP 73
                              689********************97 PP
2zf-CCCH33.76.3e-1199123327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+ ++Ck++H++
  Niben101Scf16127g00005.1  99 QPVCQYYMRTGMCKFVASCKYHHPR 123
                               689********************96 PP
3zf-CCCH35.91.2e-11144169227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C f+++tG+Ck+G +CkF+H++
  Niben101Scf16127g00005.1 144 GEKECLFYMKTGQCKFGITCKFHHPQ 169
                               7899********************97 PP
4zf-CCCH35.81.4e-11314340127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C++++++G Ck+G++C+++H+p
  Niben101Scf16127g00005.1 314 PGQPECQYYMKYGDCKFGSSCRYHHPP 340
                               5789*********************97 PP
5zf-CCCH35.41.9e-11362386327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C++++++G Ck+G++CkF H++
  Niben101Scf16127g00005.1 362 APICSHYSQNGVCKFGPSCKFDHPM 386
                               589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7094674IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-64673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-64974IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-104973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-55272IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-496123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.58296124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-599123IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-799123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001101123IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9144169IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464313341IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5317340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6357385IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6359386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145360387IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MERYSATQAM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGP ESYPERPNEA DCIYYLRTGF  60
CGYGSRCRFN HPPDRNLVMG AAKAIGGGGE GEYPERVGQP VCQYYMRTGM CKFVASCKYH  120
HPRQGGGSPA LMTHNIFGYP LRPGEKECLF YMKTGQCKFG ITCKFHHPQP AGVQVPASAA  180
RPGPFPLPAA VPPPAAYPAV QSPSVQSAQQ YGVIAGNWPV VRPTLLPGSY LPGTYGPMLL  240
PPGMVPVPGW TPYPASASQV PSLTTQPAAG AGPVYGLTQL SASAPSYMGL YASLTASIGP  300
SGSIQKEHAF PEKPGQPECQ YYMKYGDCKF GSSCRYHHPP EWSGPKSGFI LSAMGLPLHP  360
GAPICSHYSQ NGVCKFGPSC KFDHPMGISY SPSASSLVDM PVAPYPVGSS VCILAPSSSS  420
DLKPELVSGS TKDAFSTQTS SMSTSSGSVG SMFSKGGPVS HSGAQQSIQS STSSSGSSST  480
GRDGEAQTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267357.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-157C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314KY390.0A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009802825.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-128C3H family protein