PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16236g00013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 453aa    MW: 50873.2 Da    PI: 5.5882
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16236g00013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.96.3e-92574502373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 
                               ++lL++cA+a++s+d +laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ +++++ ++ ++  l  f+
  Niben101Scf16236g00013.1  57 EQLLVHCANAIESNDPTLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELAGFV 139
                               79****************************************************..667777766666554424455555555** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                               +++P+++f++ +aN aIleave+ + vHi+Df++++++Q p+L++a+++R egpp +++T+ g+ e        ++ee+g +L +
  Niben101Scf16236g00013.1 140 DLTPWHRFGFTAANGAILEAVESYSIVHIVDFSLTHCMQIPTLIDAISTRLEGPPVVKLTVAGATEDLppmLDLSYEELGAKLVN 224
                               ****************************************************************776698888999********* PP

                      GRAS 168 fAeelgvpfefnvl...vakrledleleeLrvkp......gEalaVnlvlqlhrll..............desvsleserdevLk 229
                               fA++ +v +ef+v+    ++ ++++ +++Lrv++      gEal++n++++lh+++              +++ s++s r+ +Lk
  Niben101Scf16236g00013.1 225 FARSRNVMMEFRVIpssSSDGFSNV-IQQLRVQNlispenGEALVINCHMMLHYIPeettvvsprfpldqSSNSSVSSFRSVFLK 308
                               *************977633344444.66666666666678****************************976666677799***** PP

                      GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                               ++++l P++vv+v+++ad +s++++ r+ +a++y +  +d++++ lp+  ++r+++E+  + ++i+nv+a+eg +r er e +++
  Niben101Scf16236g00013.1 309 AIRNLDPTIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPKGCKQRQWYEAD-ICWKIENVIAHEGVQRLERLEPKSQ 392
                               ***********************************************************.************************* PP

                      GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               W +r+++a F++  +se+ + ++k +l +++  g+ ++ +++ +vl+Wk++++v+++aW
  Niben101Scf16236g00013.1 393 WVQRMRNANFRSSGFSEDSVLEVKNMLDEHA-AGWGLKRDEEDVVLTWKGHNVVFATAW 450
                               *******************************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.87830432IPR005202Transcription factor GRAS
PfamPF035142.2E-8957450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMQFTESLPP SLHQQVSPIF SSLMLNKNDN QIQRARAWPG FLTSKNLGTI GDANCMEQLL  60
VHCANAIESN DPTLAQQILW VLNNIAPPDG DSNQRLTCGF LRALIVRAAK IGTCKLLTAN  120
LNHSMETHKF SIIELAGFVD LTPWHRFGFT AANGAILEAV ESYSIVHIVD FSLTHCMQIP  180
TLIDAISTRL EGPPVVKLTV AGATEDLPPM LDLSYEELGA KLVNFARSRN VMMEFRVIPS  240
SSSDGFSNVI QQLRVQNLIS PENGEALVIN CHMMLHYIPE ETTVVSPRFP LDQSSNSSVS  300
SFRSVFLKAI RNLDPTIVVL VDEDADFTSN NLVCRLRSAF NYLWIPYDTV DTFLPKGCKQ  360
RQWYEADICW KIENVIAHEG VQRLERLEPK SQWVQRMRNA NFRSSGFSED SVLEVKNMLD  420
EHAAGWGLKR DEEDVVLTWK GHNVVFATAW VPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-445145282474Protein SHORT-ROOT
5b3h_B1e-445145228420Protein SHORT-ROOT
5b3h_E1e-445145228420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258371.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-177SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A314LGA70.0A0A314LGA7_NICAT; Scarecrow-like protein 32
STRINGXP_009607182.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-175GRAS family protein