PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16332g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 176aa    MW: 20377.9 Da    PI: 6.0155
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16332g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY621.1e-19100151159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDg++WrKYG+K+vk+s++p       s+gC+vkk+ver+++d ++v++tYeg Hnhe
  Niben101Scf16332g01001.1 100 LDDGFKWRKYGKKMVKNSPNP-------SEGCNVKKRVERDNDDSSYVITTYEGIHNHE 151
                               59*******************.......68****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2286153IPR003657WRKY domain
SuperFamilySSF1182902.88E-1993153IPR003657WRKY domain
PROSITE profilePS5081122.53895153IPR003657WRKY domain
SMARTSM007745.4E-25100152IPR003657WRKY domain
PfamPF031062.3E-14101151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MENFQYSNPN PNYNYGATDF IETPEFELSD YLFPEEGLSD DFLLQNEMAS EFVQTVDHIP  60
IQLQVQLIAC KKCTKGVKKY NKVNAKSRVA FRFKSDLEVL DDGFKWRKYG KKMVKNSPNP  120
SEGCNVKKRV ERDNDDSSYV ITTYEGIHNH ESPCVLHYTQ FPPNNIPTDG LHNLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1687153174WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779355.14e-96PREDICTED: probable WRKY transcription factor 50
RefseqXP_016509832.14e-96PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A1S4D8U58e-95A0A1S4D8U5_TOBAC; probable WRKY transcription factor 50
TrEMBLA0A1U7WYP08e-95A0A1U7WYP0_NICSY; probable WRKY transcription factor 50
STRINGXP_009779355.11e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.17e-32WRKY DNA-binding protein 51