PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf16457g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 357aa MW: 37830.2 Da PI: 5.0971

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf16457g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.4	9.1e-37	89	185	3	99
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ +++ + + ++ Niben101Scf16457g00006.1 89 PPKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsVNGTLKIPTTSPA 173 6799***********************************************************7777744421111111111111 PP TCP 87 sgkaaksaakskk 99 + ++ ++a++++ Niben101Scf16457g00006.1 174 TN-SEGESATKRR 185 11.1111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.9E-30	93	173	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.342	94	148	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MENKQNIEPE NDEVNDSKIL SADPLLGDSE EYTIKAVGQH VTDAEGVGPS SPSTDIVPLL 60 KEEPAENDLR GGTISVGLNM QLQKVENPPP KRSSKDRHTK VEGRGRRIRM PAACAARIFQ 120 LTRELGHKSD GETIRWLLER AEPAIIEATG TGTVPAIAVS VNGTLKIPTT SPATNSEGES 180 ATKRRKRAAN SEFYDVHEPS NFAPVAPIAP QSLLPVWAVA SGNGLVPTTG GTTFFMVQPP 240 PTSTTTIATA GPSYPPQLWA TPLYNIPGRP ISNFVSGISY VGVSAAEGQV SSSKSDGNVS 300 AMAPSSSSIG VTTTTTTSTT TTQMLRDFSL EIYDKKELQF MVGSGSSEND QTSSSKS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MENKQNIEPE NDEVNDSKIL SADPLLGDSE EYTIKAVGQH VTDAEGVGPS SPSTDIVPLL  60
KEEPAENDLR GGTISVGLNM QLQKVENPPP KRSSKDRHTK VEGRGRRIRM PAACAARIFQ  120
LTRELGHKSD GETIRWLLER AEPAIIEATG TGTVPAIAVS VNGTLKIPTT SPATNSEGES  180
ATKRRKRAAN SEFYDVHEPS NFAPVAPIAP QSLLPVWAVA SGNGLVPTTG GTTFFMVQPP  240
PTSTTTIATA GPSYPPQLWA TPLYNIPGRP ISNFVSGISY VGVSAAEGQV SSSKSDGNVS  300
AMAPSSSSIG VTTTTTTSTT TTQMLRDFSL EIYDKKELQF MVGSGSSEND QTSSSKS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231219.1	0.0	PREDICTED: transcription factor TCP19-like
Swissprot	Q9LT89	4e-70	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A314KIA9	0.0	A0A314KIA9_NICAT; Transcription factor tcp19
STRING	XP_009780060.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-67	TCP family protein