PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf16469g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 338aa MW: 38355.1 Da PI: 6.7894

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf16469g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.2	5.2e-56	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL++k+++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+ Niben101Scf16469g01001.1 5 LPPGFRFHPTDEELISYYLTNKISDFNFTA-KAITDVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKT 88 79***********************999.88***********999999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke+++ +g l g+kktLvfy+grapkgekt+Wvmheyrle Niben101Scf16469g01001.1 89 TGKDKEIFR-GGVLAGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 131 *****.******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	59.657	5	151	IPR003441	NAC domain
Pfam	PF02365	2.2E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIS YYLTNKISDF NFTAKAITDV DLNKCEPWDL PAKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV LAGMKKTLVF YRGRAPKGEK 120 TNWVMHEYRL ETKLGFKPSK EEWVVCRVFH KNSTAKKPQP TPSSPQSEES PNYDMTYTFA 180 NELGDIESPS NFYGLATPSI GHICNNISLQ NYSNENMMNM NLNMNLATAT TREASISNTL 240 PLLPAAWSSS LLCSNLPSVD SLLLRALQFR GYNNQPREVT ISTTNNYPFI ETQNISHIGI 300 DYNNPNLAVE APSSSMVPDP VQQQQPHEQS YKLGSNIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-56	4	157	19	174	NAC domain-containing protein 19
3swm_B	4e-56	4	157	19	174	NAC domain-containing protein 19
3swm_C	4e-56	4	157	19	174	NAC domain-containing protein 19
3swm_D	4e-56	4	157	19	174	NAC domain-containing protein 19
3swp_A	4e-56	4	157	19	174	NAC domain-containing protein 19
3swp_B	4e-56	4	157	19	174	NAC domain-containing protein 19
3swp_C	4e-56	4	157	19	174	NAC domain-containing protein 19
3swp_D	4e-56	4	157	19	174	NAC domain-containing protein 19
4dul_A	4e-56	4	157	16	171	NAC domain-containing protein 19
4dul_B	4e-56	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763274.1	0.0	PREDICTED: NAC domain-containing protein 77-like isoform X1
Refseq	XP_016442160.1	0.0	PREDICTED: NAC domain-containing protein 79-like isoform X1
TrEMBL	A0A1S3XQM1	0.0	A0A1S3XQM1_TOBAC; NAC domain-containing protein 79-like isoform X1
TrEMBL	A0A1U7VLP9	0.0	A0A1U7VLP9_NICSY; NAC domain-containing protein 77-like isoform X1
STRING	XP_009763274.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-101	NAC domain containing protein 58