PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16506g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 266aa    MW: 28274.7 Da    PI: 4.5072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16506g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.3e-16102149355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Niben101Scf16506g00004.1 102 FRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 149
                               89995..678*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-27101165IPR001471AP2/ERF domain
PROSITE profilePS5103219.902101157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-25101157IPR001471AP2/ERF domain
CDDcd000181.12E-15102157No hitNo description
PfamPF008473.1E-9102149IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17102158IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MADQPADDST KTSQKNQPPQ PSESSQTPFC PIPPPLLQPQ PVEETHISPR PLISDIAILE  60
NTISTPKTVQ LPNIIPTVTT NMSSTSSGGS PSRPTGGKHA VFRGIRSRSG KWVSEIREPR  120
KTTRIWLGTY PTPEMAAAAY DVAALALKGG DAVINFPGNL TSYPSLPPSP SPADIRKAAA  180
TAAALMKPQT GESTMPTQPG NDDKSSGNAQ MMETGGDEYI DEEALFDMPN LLVDMAEAMM  240
VSPPRMNSPP SSDSPGNSDA ESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1492157572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764333.11e-133PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ906e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U7VDB41e-131A0A1U7VDB4_NICSY; ethylene-responsive transcription factor ERF027-like
STRINGXP_009764333.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.19e-41ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]