PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16585g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 256aa    MW: 29074.5 Da    PI: 9.7598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16585g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-1184131554
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                  +Er+RR+++   +++Lr l+P+       +K s ++ Le+ v+YIk++
  Niben101Scf16585g02001.1  84 RRDVERQRRRDMARLYQRLRFLIPSkY---LMGKRSISDHLEEIVDYIKDM 131
                               5689*********************77...9******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.93579131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-980150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-883150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-884131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDDSDQFDYA QVEHLLHLLS SSPSSPPPPM TTTTNSSVPL QTQSCNLVNT PVPIRKAATA  60
NIDQDTGKGK PPKEKENSVK KVLRRDVERQ RRRDMARLYQ RLRFLIPSKY LMGKRSISDH  120
LEEIVDYIKD MRKNIEELES KRERLKEMRN ICSADHNSHL AAPSSSMGSD DNHDRIIVKK  180
CKEGVLEISV ISNLGGALAL SKVIRVLMEE GLLVISCVSS KINQRILHII QSEVNSRRDI  240
DLARLQFKLM SLSYKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246617.11e-136PREDICTED: transcription factor bHLH120-like
TrEMBLA0A1J6IE631e-135A0A1J6IE63_NICAT; Transcription factor bhlh126
STRINGXP_009791858.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128311118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-18bHLH family protein