PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17122g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 227aa    MW: 26480.7 Da    PI: 5.2955
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17122g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.7e-202474656
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              +ft+eq++ Le++F+++ ++  +++ eLA+ lgL+ rqV +WFqNrRa++k
  Niben101Scf17122g00007.1 24 RFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74
                              7*************************************************9 PP
2HD-ZIP_I/II122.52.1e-3923112493
               HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                               +r+++eqvklLE++F++e+kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y+ Lk+++d+l+ + ++L++e+e+L 
  Niben101Scf17122g00007.1  23 KRFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRLLKAEFDKLNMQFQSLKQEKESLL 107
                               8************************************************************************************ PP

               HD-ZIP_I/II  89 eelke 93 
                               ++l+e
  Niben101Scf17122g00007.1 108 KQLEE 112
                               99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-191177IPR009057Homeodomain-like
PROSITE profilePS5007117.8481676IPR001356Homeobox domain
SMARTSM003893.9E-181880IPR001356Homeobox domain
CDDcd000863.32E-152477No hitNo description
Gene3DG3DSA:1.10.10.601.9E-202483IPR009057Homeodomain-like
PfamPF000462.1E-172474IPR001356Homeobox domain
PRINTSPR000313.8E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000313.8E-65672IPR000047Helix-turn-helix motif
PfamPF021836.6E-1276117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEAEDTLTQG NTEPSNKKSK DGKRFTDEQV KLLESMFKQE TKLEPRKKLE LARDLGLQPR  60
QVAIWFQNRR ARWKSKQMEH EYRLLKAEFD KLNMQFQSLK QEKESLLKQL EELNDQLENN  120
HAGCIKGQDS LDSEIYTCSE NGGTDLELKD NNIPGCLNAS LVDKRVKEVE NDREGRLIEH  180
FRWKEEPEFW NIKELGDSSL GSPGHWCAVG LGRTFDLSCG NSKWWEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876RRARWKSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234402.11e-156PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1J6KVH91e-155A0A1J6KVH9_NICAT; Homeobox-leucine zipper protein athb-12
STRINGXP_009803292.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.28e-35homeobox 7