PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17153g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 609aa    MW: 66166.1 Da    PI: 6.5756
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17153g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.4e-29254311260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgynW KYGqK vkgsefpr YY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Niben101Scf17153g00005.1 254 DDGYNWIKYGQKLVKGSEFPRTYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 311
                               8****************************************.***************85 PP
2WRKY106.11.8e-33425483159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Niben101Scf17153g00005.1 425 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 483
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-24244312IPR003657WRKY domain
PROSITE profilePS5081121.058248312IPR003657WRKY domain
SuperFamilySSF1182901.44E-22250312IPR003657WRKY domain
SMARTSM007744.9E-30253311IPR003657WRKY domain
PfamPF031069.7E-22254310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37410485IPR003657WRKY domain
SuperFamilySSF1182902.48E-29417485IPR003657WRKY domain
PROSITE profilePS5081138.825420485IPR003657WRKY domain
SMARTSM007743.1E-39425484IPR003657WRKY domain
PfamPF031063.7E-26426483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MEDSQSQSQS HYSHQYNHSS PLPSINESSE QQLKISSCDA SSIGSNSSRG AKYKLMSPAK  60
LPISRSACIT IPPGLSPSSF LESPVLLSNI KAEPSPTTGS FSKFQLMQGS SRRAAFSFMR  120
SCSSGNAYDE MTGEFEFKFA VGSSSTSGSL AKEAATFAGL NQQQSEPLNQ IQDQCLSQSF  180
APSALVKSEM PNSKEVSLPV PVSLDASSIS TAAADAAAID NEEISQRVHS NPSSQGSHAD  240
NRDVSSITAE RSSDDGYNWI KYGQKLVKGS EFPRTYYKCT YPNCEVKKIF ERSPEGQITE  300
IVYKGSHDHP KPQPSRRFTP GALTSIQEDR SEKEASFTGQ EDKFNTNAYA SNIEPSSTPV  360
SPRLADDDGL EGTVSQLQSA NDQLDEDDPF AKRRKMDGGM DITPVVKPIR EPRVVVQTVS  420
EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK AVITTYEGKH  480
NHDVPTARNN SHEMAGSMPV TGSSRFRAEE NGSISLDLGV GIGYGMENRS NGQLQTLPAE  540
NVRNQVQVSS SSMMVVQPAA VAASYGIVNG GMSRYGSIDN RIQGTGFESL PLQPSTQCHQ  600
NYGRIILGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34254485877Probable WRKY transcription factor 4
2lex_A2e-34254485877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790875.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-155WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1U7XWK30.0A0A1U7XWK3_NICSY; probable WRKY transcription factor 20 isoform X1
STRINGXP_009790875.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-147WRKY family protein