PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17237g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 270aa    MW: 28668.2 Da    PI: 8.2959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17237g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016104126123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C+k Fs+   L  H  +H
  Niben101Scf17237g00001.1 104 YKCSVCDKAFSSYQALGGHKASH 126
                               9***********99999998887 PP
2zf-C2H2140.00015163185123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F++   L  H r+H
  Niben101Scf17237g00001.1 163 HVCSICHKAFPTGQALGGHKRRH 185
                               79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-8103126No hitNo description
SMARTSM003550.0073104126IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-13104128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-8158185No hitNo description
SMARTSM003550.065163185IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-12163187IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619163190IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MALEALKSPT AATPTLPPRY EDVDEIHNLD SWAKGKRSKR PRIETPPTEE EYLALCLIML  60
ARSGTGPSLT DAATTSQQPA EKKTGQLPPV PKKEVATEHT EQSYKCSVCD KAFSSYQALG  120
GHKASHRKIT AISTAASDDN NPSTSTCTSA VNISALNPTG RSHVCSICHK AFPTGQALGG  180
HKRRHYEGKL GGNSRDIGGG GGHSGSVLTT SDGGASTHTL RDFDLNMPAS PELQLGLSID  240
CGRKSQLLPI DQEVESPMPA KKPRLLFSLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240274.11e-172PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1J6JT631e-170A0A1J6JT63_NICAT; Zinc finger protein zat10
STRINGXP_009625229.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-54salt tolerance zinc finger