PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf17394g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 266aa MW: 29982.7 Da PI: 6.9847

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf17394g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H Niben101Scf17394g00001.1 129 YRCETCNKKFRSYQALGGHRASH 151 9***********99999998887 PP
2	zf-C2H2	13	0.0003	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H Niben101Scf17394g00001.1 175 HECPICYRVFSSGQALGGHKRSH 197 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.95E-9	129	197	No hit	No description
Pfam	PF13912	1.2E-10	129	153	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.346	129	156	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	129	151	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	131	151	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.307	175	197	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.4E-13	175	197	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	175	197	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	177	197	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEKHKTCKLC SRKFTNGRAL ESETESTKNP TRSRRSKRVR KSSIINPNFV KVTEYCSSMV 60 ETEPVSSISE TSPEEDVAHC LMMLSRDKWI KQQVDHYSDE EEEEEEEYKE ENSGAQVKVI 120 TKNRGRGKYR CETCNKKFRS YQALGGHRAS HKKIKVSNYN NEGVENVGVI EEKIHECPIC 180 YRVFSSGQAL GGHKRSHVIG VSTTAANISV PVFIPTAAKL EFSRNGGSLI DLNLPPPMEE 240 LDDEIISQVE VSAVSDDAEF VNPIKH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226021.1	1e-153	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A314KSG5	1e-151	A0A314KSG5_NICAT; Zinc finger protein zat9
STRING	XP_009804983.1	1e-152	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1095	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-41	C2H2-like zinc finger protein