PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17513g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 195aa    MW: 22226.2 Da    PI: 9.342
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17513g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.72e-23116159144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               +aep+rCrRtDGKkWRCsr+v++++k+C++H+hrgr+r rk+++
  Niben101Scf17513g00008.1 116 EAEPRRCRRTDGKKWRCSRNVVQNQKYCDKHMHRGRHRPRKHVK 159
                               58***************************************985 PP
2QLQ41.83.2e-156094337
                       QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              FT  Q q+L++Q  +yKy+ a+ P+P++L+ +i+k
  Niben101Scf17513g00008.1 60 FTFLQRQELEQQFFIYKYIEAGIPIPSHLIIPIFK 94
                              9999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-55894IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.0615994IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-116093IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.522116160IPR014977WRC domain
PfamPF088797.7E-19117158IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDLKIPPPKN IASKKDCYNV SNGEEGKCST ELGLNLELSQ HGDNNEYSNY SKFNTSGYGF  60
TFLQRQELEQ QFFIYKYIEA GIPIPSHLII PIFKSITCSL KGLQDVMGYG YLGNMEAEPR  120
RCRRTDGKKW RCSRNVVQNQ KYCDKHMHRG RHRPRKHVKL SSSTIKSSST METAAKAHEN  180
SEPDTTTFSI APPIN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586881.11e-107PREDICTED: growth-regulating factor 10-like
SwissprotQ6AWX71e-37GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A2G3AE893e-84A0A2G3AE89_CAPAN; Growth-regulating factor 10
STRINGXP_009586881.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1447199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.15e-27growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]