PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf17594g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 698aa MW: 79869.9 Da PI: 8.2487

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf17594g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.5e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 +fY e+A+ +GFs+r+++++ + + t+r fvC + g++ + +++k +r+r+++r+gC+a ++++k++ +w+vt + Niben101Scf17594g00002.1 62 EFYAEFARGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNKPQRNRKSSRCGCQAYMRISKTTnlgVPEWRVTGF 146 6************9998877356667999************99******************99777789** PP FAR1 82 eleHnHela 90 ++HnHel Niben101Scf17594g00002.1 147 MNHHNHELL 155 *****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-20	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	575	608	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-7	578	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	583	610	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MSEEAGQMMV LYGDSSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPTHDAA 60 YEFYAEFARG CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKAAND NKPQRNRKSS 120 RCGCQAYMRI SKTTNLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DSDKSRILMF 180 AKTGISVQQM MRLMELEKGV EPGFLPFTEK DVRNLLQSFR KVDPEDESID LLKMCRNIKE 240 KDPNFKYDFS LDSNNRLENI AWSYASSIQS YDVFGDAVVF DTTHRLTAFD MPLGIWVGVN 300 NYGMPCFFGC VLLREETLRS YSWSLKAFLA FMNGKAPQTV LTDQNMCLKE AINLEMPSTK 360 HALCIWLIVS KFPSWFNAVL GVRYNDWKAE FHRLYNLESA EDFELGWRDM VNSFGLHTNR 420 HIASLFALRS LWALPYLRSH VFAGMTTAGH SKSINAFIQR FLSAQTRLAH FVEQVCNVRS 480 LLNVRDGQIV DKLVAVTVDF KDQAGEQQTM QQNLQNICLK TGAPMEAHAA TVLTPFAFSK 540 LQEQLVLAAH YASFQTEEDF LVRHHTKLEG GRKVYWVPRE GIISCSCHQF EFSGILCRHA 600 LRVLSTGNCF QIPDRYLPHR WRRISTPSTK YLQNTHNDHT ERVQLLQSMV STLVTESAKS 660 RERLEIATEN VSILLSRIRE QPICSQGVRE LSSNQRNI

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MSEEAGQMMV LYGDSSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPTHDAA  60
YEFYAEFARG CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKAAND NKPQRNRKSS  120
RCGCQAYMRI SKTTNLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DSDKSRILMF  180
AKTGISVQQM MRLMELEKGV EPGFLPFTEK DVRNLLQSFR KVDPEDESID LLKMCRNIKE  240
KDPNFKYDFS LDSNNRLENI AWSYASSIQS YDVFGDAVVF DTTHRLTAFD MPLGIWVGVN  300
NYGMPCFFGC VLLREETLRS YSWSLKAFLA FMNGKAPQTV LTDQNMCLKE AINLEMPSTK  360
HALCIWLIVS KFPSWFNAVL GVRYNDWKAE FHRLYNLESA EDFELGWRDM VNSFGLHTNR  420
HIASLFALRS LWALPYLRSH VFAGMTTAGH SKSINAFIQR FLSAQTRLAH FVEQVCNVRS  480
LLNVRDGQIV DKLVAVTVDF KDQAGEQQTM QQNLQNICLK TGAPMEAHAA TVLTPFAFSK  540
LQEQLVLAAH YASFQTEEDF LVRHHTKLEG GRKVYWVPRE GIISCSCHQF EFSGILCRHA  600
LRVLSTGNCF QIPDRYLPHR WRRISTPSTK YLQNTHNDHT ERVQLLQSMV STLVTESAKS  660
RERLEIATEN VSILLSRIRE QPICSQGVRE LSSNQRNI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765793.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_016446010.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S3Y1N1	0.0	A0A1S3Y1N1_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBL	A0A1U7VHG2	0.0	A0A1U7VHG2_NICSY; protein FAR1-RELATED SEQUENCE 11 isoform X1
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]