PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf18002g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 235aa MW: 25961.1 Da PI: 4.8857

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf18002g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.1	4.1e-56	40	144	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa Niben101Scf18002g00001.1 40 QLQMFWTYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAA 124 89***998899******************************************************************** PP NF-YC 83 vtrtdifdflvdivprdelk 102 +trtdifdflvdivprde+k Niben101Scf18002g00001.1 125 ITRTDIFDFLVDIVPRDEIK 144 ***************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.37E-34	22	134	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.0E-37	54	126	IPR009072	Histone-fold
Pfam	PF00808	1.6E-20	62	125	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDNNPHQSPT AAATAAAAAQ SAPYPQQTPY HHLLQQQQQQ LQMFWTYQRQ EIEQANDFKN 60 HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL TIRSWLHAEE NKRRTLQKND 120 IAAAITRTDI FDFLVDIVPR DEIKDESGVV GLGPGMVGPT ASGVPYYYPP LGQLTPPGGV 180 MMGRPAPMAG VDPAAFYSQP PSQAWQWQAT EDNSYASGGS SGQGNLDGQT RDDEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-54	48	140	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780179.1	1e-167	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_016502099.1	1e-167	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	1e-100	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A1S4CME4	1e-166	A0A1S4CME4_TOBAC; nuclear transcription factor Y subunit C-1-like
TrEMBL	A0A1U7WZX3	1e-166	A0A1U7WZX3_NICSY; nuclear transcription factor Y subunit C-1-like
STRING	XP_009780179.1	1e-167	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	6e-95	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]