PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18102g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 277aa    MW: 31810.9 Da    PI: 7.1736
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18102g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.7e-36211572112
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.. 73 
                               +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++           +sss ++   
  Niben101Scf18102g00002.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpiidaadGSSSGNNIpl 105
                               79**************************************************************888888876652222223322 PP

                       TCP  74 eaesssssas.nsssg........................kaaksaakskksqksaasalnlak 112
                               e ++++++   +   +                        +        + s +++   l+l+ 
  Niben101Scf18102g00002.1 106 E-QQQQQEFRfH---RqleennpsgtslmnfqnypheimpR--------SASFQNEDLGLSLHS 157
                               1.1111111121...12223444555666664443333331........333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3221145IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPI IDAADGSSSG NNIPLEQQQQ QEFRFHRQLE  120
ENNPSGTSLM NFQNYPHEIM PRSASFQNED LGLSLHSTTF HDHNSNHRAS SSHDHQTIFS  180
SQNFETNYSR MAGWILPHHH QQTLYSPQPQ GAVFPQREPL QSNFSQLIHD WEERPPMNHV  240
HHQAEISNRH FTSDFQIPAR IHGEHEEPSS ASPNSHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-232881154Putative transcription factor PCF6
5zkt_B6e-232881154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267112.11e-179PREDICTED: transcription factor TCP4-like
TrEMBLA0A1J6JEY91e-178A0A1J6JEY9_NICAT; Transcription factor tcp4
STRINGXP_009629629.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-48TCP family protein