PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf18182g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 895aa MW: 97594.6 Da PI: 5.0324

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf18182g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	21.3	5.2e-07	558	583	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek++sl++l++yFs+++kdAAk++g Niben101Scf18182g00007.1 558 AEKHVSLSVLQQYFSGSLKDAAKSIG 583 5899********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54277	1.31E-22	787	878	No hit	No description
Pfam	PF00564	9.0E-19	795	876	IPR000270	PB1 domain
SMART	SM00666	2.9E-23	795	877	IPR000270	PB1 domain
PROSITE profile	PS51745	20.481	795	877	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-24	795	877	No hit	No description
CDD	cd06407	1.65E-33	796	876	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MEIMNLDAYT GWCTSPSAAE QMFASYAASS QINSMSQSYA PFEGLSYTEQ NTGTFPPMDA 60 SMVGSTDCGG EKMMFGQNDE QLHFVVDSTD GGGLVAKRSK NSSHQANDAD FDNSIVIKSP 120 SQPLAERMLR ALAMFKELSG AGILAQVWIP MKNKDRYVLS TCEQPYLLDQ ALSGYREVSR 180 KFMFDAETKP GSIPGLPGRV FSSRIPEWTS NVLYYKEAEY LRVQYAANHE VRGSVALPVF 240 EDDACGTPCC AVLELVTMKE KPHFDLEMDH VCRALQAVNL RSIAPPRLHS QSLSKNQRAA 300 LAEITDVLRA VCLAHKLPLA LTWIPCCVAE GEGDESLRVL ARGCNASSNE KCVLCAEDTA 360 CYVRDKEMQG FVHACLEHYL ELGEGIVGKA LQSNHPFFYP DVKEYHISEY PLVHHARKFG 420 LNAAVAIRLR STFTGNDDYI LEFFLPISMK GSTEQQLLLN NLSGTMQRIC RSLRTVSDAE 480 LVGQGATFGL RDGFAPNLTP ITLSRRNSQH SLDSNSNSAS VAPLGLSDSR SVGMQADGSR 540 EQTMTGSRRQ MEKKCSTAEK HVSLSVLQQY FSGSLKDAAK SIGGVEGGLK FDPATGGLVP 600 ASSIIQDFDA EQSIFFLCKD VSVKNPSSVF QDAVSVPSTS GIDKENSMVK MEEDSYVDGD 660 QLGQSNHINT SSFKGGNKSS IPLSGFCYEP KLAALDAMSS RPANQTMPLT NSRNASLGSF 720 HTKEGCGRWG LDNDTLDNFE CHFTSQCSYS KAAGGDGDTK MKGDNEMGGD GGVIEHNQLS 780 SSAMTDSSNG SDGSTITVKA TYKEDTTRFK FEPSAGCFQL YEEVAKRFKL QTGTFQLKYL 840 DDEEEWVMLV NDADLHECLE VLDFVGGRTI KFLVRDTPYA MGSSGSSNCF LASGS

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MEIMNLDAYT GWCTSPSAAE QMFASYAASS QINSMSQSYA PFEGLSYTEQ NTGTFPPMDA  60
SMVGSTDCGG EKMMFGQNDE QLHFVVDSTD GGGLVAKRSK NSSHQANDAD FDNSIVIKSP  120
SQPLAERMLR ALAMFKELSG AGILAQVWIP MKNKDRYVLS TCEQPYLLDQ ALSGYREVSR  180
KFMFDAETKP GSIPGLPGRV FSSRIPEWTS NVLYYKEAEY LRVQYAANHE VRGSVALPVF  240
EDDACGTPCC AVLELVTMKE KPHFDLEMDH VCRALQAVNL RSIAPPRLHS QSLSKNQRAA  300
LAEITDVLRA VCLAHKLPLA LTWIPCCVAE GEGDESLRVL ARGCNASSNE KCVLCAEDTA  360
CYVRDKEMQG FVHACLEHYL ELGEGIVGKA LQSNHPFFYP DVKEYHISEY PLVHHARKFG  420
LNAAVAIRLR STFTGNDDYI LEFFLPISMK GSTEQQLLLN NLSGTMQRIC RSLRTVSDAE  480
LVGQGATFGL RDGFAPNLTP ITLSRRNSQH SLDSNSNSAS VAPLGLSDSR SVGMQADGSR  540
EQTMTGSRRQ MEKKCSTAEK HVSLSVLQQY FSGSLKDAAK SIGGVEGGLK FDPATGGLVP  600
ASSIIQDFDA EQSIFFLCKD VSVKNPSSVF QDAVSVPSTS GIDKENSMVK MEEDSYVDGD  660
QLGQSNHINT SSFKGGNKSS IPLSGFCYEP KLAALDAMSS RPANQTMPLT NSRNASLGSF  720
HTKEGCGRWG LDNDTLDNFE CHFTSQCSYS KAAGGDGDTK MKGDNEMGGD GGVIEHNQLS  780
SSAMTDSSNG SDGSTITVKA TYKEDTTRFK FEPSAGCFQL YEEVAKRFKL QTGTFQLKYL  840
DDEEEWVMLV NDADLHECLE VLDFVGGRTI KFLVRDTPYA MGSSGSSNCF LASGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253146.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_019253147.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	A0A1J6I1D4	0.0	A0A1J6I1D4_NICAT; Protein nlp8
STRING	XP_009588830.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein