PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18268g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 432aa    MW: 48844.2 Da    PI: 7.566
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18268g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.66.3e-108404261373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lLl+cA++ ssg+l+ a+a+L+++ +la+ +gd+mqRlaa f+ ALa rl++ +++lykal  ++ + ++ ++   ++ +f 
  Niben101Scf18268g01001.1  40 LIHLLLTCANHTSSGNLHHADACLSQILQLAAITGDSMQRLAAWFASALAIRLVKRWPGLYKALDRRAVP-SRIVDLDRSRITFA 123
                               689*************************************************************999987.567777788889** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               +++P+l f++ + N+ + +a+++++ +Hi+Df+ +    W ++l+ + + p+g+p+l+iT v++    +k +lee+++r++k A+
  Niben101Scf18268g01001.1 124 KAFPYLGFAYAVINKVLIQAMSEDHIIHIVDFGSGDAKLWTPFLKNIVNLPNGTPNLKITSVNN----NKAMLEEMESRIKKEAK 204
                               ****************************************************************....9**************** PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkv 238
                               +l+++f+f+ l   +l +l+l++L+vk gE+la  +vl+lh ll                 +++v+  ++ +e+L ++ slsPkv
  Niben101Scf18268g01001.1 205 ALDISFQFSSL-NVNLRELTLDMLKVKAGESLAFVSVLNLHVLLaeddrinsqfdlnknnnNNNVKECKRMNEFLTMLHSLSPKV 288
                               **********5.889*******************************************98877777777999************* PP

                      GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerl 319
                               +++veqeadhn +++++rf+e l+yysalfds+++k+   +    eer+ +E++ lg+ei+n+vaceg er+erhe+++kW  rl
  Niben101Scf18268g01001.1 289 LILVEQEADHNLSKLVDRFVEGLHYYSALFDSIDTKFKGSNyslcEERVELEQM-LGKEIENMVACEGLEREERHERFGKWILRL 372
                               ************************************998889999*********.****************************** PP

                      GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++ GF+pv+l ++++++ak+l++ ++ dgy++ +++gsl+++W+drp++svSaW
  Niben101Scf18268g01001.1 373 TRGGFRPVRLWYDIMEDAKRLVEAYGCDGYKIISQKGSLMICWHDRPIYSVSAW 426
                               ****************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.60614407IPR005202Transcription factor GRAS
PfamPF035142.2E-10540426IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1508.2E-6135216IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MNISSPAIKP DVTLSLTLSS STSTSSNTTT DSPEERGVKL IHLLLTCANH TSSGNLHHAD  60
ACLSQILQLA AITGDSMQRL AAWFASALAI RLVKRWPGLY KALDRRAVPS RIVDLDRSRI  120
TFAKAFPYLG FAYAVINKVL IQAMSEDHII HIVDFGSGDA KLWTPFLKNI VNLPNGTPNL  180
KITSVNNNKA MLEEMESRIK KEAKALDISF QFSSLNVNLR ELTLDMLKVK AGESLAFVSV  240
LNLHVLLAED DRINSQFDLN KNNNNNNVKE CKRMNEFLTM LHSLSPKVLI LVEQEADHNL  300
SKLVDRFVEG LHYYSALFDS IDTKFKGSNY SLCEERVELE QMLGKEIENM VACEGLEREE  360
RHERFGKWIL RLTRGGFRPV RLWYDIMEDA KRLVEAYGCD GYKIISQKGS LMICWHDRPI  420
YSVSAWNCAF IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-443442712378Protein SCARECROW
5b3h_D3e-443442712378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759684.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A1U7VBL10.0A0A1U7VBL1_NICSY; scarecrow-like protein 3
STRINGXP_009759684.10.0(Nicotiana sylvestris)
STRINGXP_009603019.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-109scarecrow-like 3