PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18347g00023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 161aa    MW: 17850.2 Da    PI: 5.4076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18347g00023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.63.7e-092283056
                       AP2 30 rfslgkfgtaeeAakaaiaarkklege 56
                              r++lg+++tae Aa a+++a+ kl+ge
  Niben101Scf18347g00023.1  2 RVWLGTYDTAEAAAYAYDRAAYKLRGE 28
                              79***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.144135IPR001471AP2/ERF domain
SMARTSM003802.1E-5241IPR001471AP2/ERF domain
PfamPF008471.2E-5228IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-11235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-15236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNIRDP SKLGFGDSEK MNAVKNAVDA  60
KIQAICQKVK REKAKKGAKK KSENESKVKE TMDSSSSTSS LVGDVISPSV SEDGLWKSEN  120
SNCSIFGDCL KEPLMESEFD SCSLARMPSF DPELIWEVLA N
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759539.11e-114PREDICTED: ethylene-responsive transcription factor ERF061
RefseqXP_016460970.11e-114PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W23e-35ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S3Z9431e-113A0A1S3Z943_TOBAC; ethylene-responsive transcription factor ERF061-like
TrEMBLA0A1U7VB751e-112A0A1U7VB75_NICSY; ethylene-responsive transcription factor ERF061
STRINGXP_009759539.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-26ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]