PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf18356g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 158aa MW: 18751.9 Da PI: 9.9608

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf18356g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.5	9.6e-10	7	40	5	38
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevavi 38 n+ +r++ + ++++KKAeELS+ C++e+ +i Niben101Scf18356g00007.1 7 NEGRRSIILQEMMKTLFKKAEELSIVCGVEIVLI 40 56678888888889*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.138	1	40	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-6	7	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-7	7	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MKRKNINEGR RSIILQEMMK TLFKKAEELS IVCGVEIVLI KKLLNLSGHQ ETNLNNSLDK 60 PLRGSTHEQF LRNEIEKNVR NIDQQKIEEK EIEHLFKQLY LGKKSVFELD KRQLIGVRNL 120 AMKAKEKEYD SSYKINVLGY QLITYHFDLL HFIMYKIN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019261164.1	5e-51	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A314LAN7	1e-49	A0A314LAN7_NICAT; Agamous-like mads-box protein agl80
STRING	XP_009796922.1	2e-45	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129