PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18484g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 171aa    MW: 18917.5 Da    PI: 8.6877
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18484g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY813.6e-25876473
                     YABBY  4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelle 73
                               ssse+vCyvqCnfCnt lavsvP +s++++vtvrCGhC++l+s+n+    + l+ ++ l++s  e+  +
  Niben101Scf18484g01002.1  8 SSSSERVCYVQCNFCNTNLAVSVPCSSMMTIVTVRCGHCANLFSLNIGSLLHSLPLQD-LQRSNIEDASK 76
                              6899***************************************************998.67776666544 PP
2YABBY119.64.8e-3793145118170
                     YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                PekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl
  Niben101Scf18484g01002.1  93 APEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 145
                               69*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-5910145IPR006780YABBY protein
SuperFamilySSF470953.67E-884138IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.8E-594137IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSLDITYSSS SERVCYVQCN FCNTNLAVSV PCSSMMTIVT VRCGHCANLF SLNIGSLLHS  60
LPLQDLQRSN IEDASKACGS SSSTNYHRFS AIAPEKRQRV PSAYNRFIKE EIQRIKASNP  120
DITHREAFST AAKNWAHFPH IHFGLKLEGN KQAKLDHAVA GEGPQKSIGL Y
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234445.11e-117PREDICTED: axial regulator YABBY 5-like isoform X4
SwissprotQ9XFB01e-66YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A1J6KYN51e-114A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRINGXP_009792033.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-69YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]