PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18577g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 423aa    MW: 46536.7 Da    PI: 5.4894
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18577g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06344439
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              ++C+ ++e++ + +C+++  +lC +C  + H+       H++
  Niben101Scf18577g00009.1  3 HICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                              68*****************************65677777765 PP
2CCT63.56.4e-22366409144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               R +a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Niben101Scf18577g00009.1 366 RSNAVLRYKEKKKTRKFDKHVRYASRKARADARRRVKGRFVKAG 409
                               899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000215.94E-8447No hitNo description
PROSITE profilePS5101715.13366408IPR010402CCT domain
PfamPF062032.4E-16366408IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCEG CNSQPAVVRR  60
VEEKISLCKN CDSISHATGS MHKKQALSCY TGCPSAAELS TIWSFLLDGD STCQKGIGAM  120
SITDNQPRDN QDRQGKYNSQ DMSAAVEMSE LHTSSDKSTA LIESSLPTPD NKQNKVDLYA  180
GSKNYSSSKG CYSGMKGSTI YEDDPFAQDF NMDEVDLSFE NYEELFSSSL DNPNQLFEND  240
DIDGLFGMKD MSVSGSSCQD ADAIEISFLL TTYGGFSATQ NGSSIRRVMT MQPACSNAES  300
ADSLVSCKTE PSICFARQAS ILSFSNLGGE SNAGDYQECG ASTMLLMGEP PWYHAFPETS  360
LPSSSRSNAV LRYKEKKKTR KFDKHVRYAS RKARADARRR VKGRFVKAGD AYDYDPLNET  420
RSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789804.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like isoform X1
SwissprotQ9SSE51e-120COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1U7XSD60.0A0A1U7XSD6_NICSY; zinc finger protein CONSTANS-LIKE 10-like isoform X1
STRINGXP_009789804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-111CONSTANS-like 9